Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0159 ATGGTTCAAGCTCAACGGCTCAATAACGGAACTTATAACTTGCCTCAAGAAATCACTTCCTTGCTCCATCCACTCAATTGCCTTCCTCCAGTTAAAGCGTCCCGTATTCCGGATACTGAAGGAAGGAAAAGCCTTCGAGTAAGGATAGGAGGAGGCTTCAGGTATTGGGAAATTGTTGACAGGAAGGGGCTAGAGAATGCTAATTTGGAAGGGCTTTTCAAGGAGGTTGAAGAAGCGAAACACCCAGAAAAGAAAGGCAAAGTGAAGAAGAAGAAGTTGAAGTGCTGTAAGAAGGAGCTCATCTTGTGGCTGCTGAACCTCTACATTCCAAGGAGATCTCGAACCGTTGTCTTAGGTATTCATCTTTGCTCATATTCTAAACCTATGACATCTGATTCGAATGGAGCTGCATCCTATAACACCCTCAAGTCTATCTGTTACAAACGTGGTTCGCTTCAGCTTCTTGATCAGAGAAAGCTCCCTCTAGAAAGTGTTTACTTGGACATTCTGAATTCAACAGATGGCTGGAATGCCATAAAGGATATGGTGGTCCGTGGAGCACCTGCTATTGCTATCACAGCAGCACTTTCTTTGGCTGTTGAAGTTTTCAATCTAGAGTCATTTAATGGGTCCCCTGCTGATGCAGCTTCCTTTCTTGGAGAGAAATTAGATTATCTTGTCTCAAGATGCTGTAACCAAACTCAAAGAAGTATATCTAAGGCTGTTGCATCTACTACAGAGGCCAAGAGTGTTTTTCAGGCATATATAGAAGCCGCCGAGGTTATGCTTGAGGATGATGTTGCCTCAAACAGAGCAATTGGATCTTATGGAGCTAGTATTATTCAACAACAGACGGGGAAAATAAAGCTTTCCGTCTTGACCCATTGCAACACTGGAAGTCTTGCCTGTGCTGGATATGGTACTGCTCTGGGGGTAATTCGTGCACTTCATAGTGAAGGGGTTTTAGAAAGGGCCTATTGCACAGAAACACGCCCATTCAATCAGGGGTCTAGGCTCACGGCCTATGAGTTGGTGCATGAACACATACCTGGAACTCTTATAGCAGATTCTGCAGCAGCTGCACTGATGAAAGCTGGACGAGTAGATGCTGTTGTTGTTGGGGCAGACCGTGTTGCATCAAATGGTGATACAGCCAACAAAATTGGAACCTATAGTGTTGCCTTATGTGCCAAGTTTCATAATGTACCCTTTTACGTGGCTGCCCCTTTGACTTCCATTGATCTATCACTCTCTTCCGGACAAGGAATTGTCATTGAGGAGAGATCTCCCAAGGAATTGTTGAATGCACGTGGAGGACTTGGAGAGCCTGTTGCAGCCCCAGGAATTTCTGTGTGGAACCCCGCTTTTGATGTCACACCGGCGGGTCTGATTTCTGGCATCATCACAGAGAAGGGTGTCATTACCAAGACAAGTGATGACGCATTCGACATAAAAGCTTTCCCACACAAGACAGTAGTGGCATTTATTGATGGTTTTCACTTCGCACCGCTTTCTGATGCCATGGATGCTTGTGGTCATCTTGTTTTTGGGTAG 1554 0.4511 MVQAQRLNNGTYNLPQEITSLLHPLNCLPPVKASRIPDTEGRKSLRVRIGGGFRYWEIVDRKGLENANLEGLFKEVEEAKHPEKKGKVKKKKLKCCKKELILWLLNLYIPRRSRTVVLGIHLCSYSKPMTSDSNGAASYNTLKSICYKRGSLQLLDQRKLPLESVYLDILNSTDGWNAIKDMVVRGAPAIAITAALSLAVEVFNLESFNGSPADAASFLGEKLDYLVSRCCNQTQRSISKAVASTTEAKSVFQAYIEAAEVMLEDDVASNRAIGSYGASIIQQQTGKIKLSVLTHCNTGSLACAGYGTALGVIRALHSEGVLERAYCTETRPFNQGSRLTAYELVHEHIPGTLIADSAAAALMKAGRVDAVVVGADRVASNGDTANKIGTYSVALCAKFHNVPFYVAAPLTSIDLSLSSGQGIVIEERSPKELLNARGGLGEPVAAPGISVWNPAFDVTPAGLISGIITEKGVITKTSDDAFDIKAFPHKTVVAFIDGFHFAPLSDAMDACGHLVFG 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0159 517 TIGRFAM eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 172 476 IPR011559 GO:0044249
Lele20g0159 517 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 140 489 - -
Lele20g0159 517 SUPERFAMILY NagB/RpiA/CoA transferase-like 139 478 IPR037171 -
Lele20g0159 517 FunFam Methylthioribose-1-phosphate isomerase 288 485 - -
Lele20g0159 517 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 142 485 IPR005251 -
Lele20g0159 517 Gene3D - 140 322 IPR027363 -
Lele20g0159 517 FunFam Methylthioribose-1-phosphate isomerase 141 322 - -
Lele20g0159 517 Pfam Initiation factor 2 subunit family 184 475 IPR000649 GO:0044237
Lele20g0159 517 TIGRFAM salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 143 476 IPR005251 -
Lele20g0159 517 Gene3D - 323 487 IPR042529 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0159 Lele-ChrLele20 8976103 8983914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0159 181 490 Eukaryotic Initiation Factors Gene Family AT2G05830 73.438 8.58e-157 447