Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0150 ATGAGAAAACCCAAATCAAGGGACTTCCACAAGCAGCGAAGGCTTGCAGAGGAAGATGAGATTAAACTTTTGGACTCATGGATTCAATCCCAGAAACCAGACTCTGGATCCAACCCCATGTCATTTCCCCCTTTATCCTCCAAAGACCCTGTAGGTTGCATTGATGGCAATACATTTTCGCGATATGTGGGTGTCACGAGGTTTGACCAGCTGCCAATTTCCAAGAAAACCAAGGATGCTTTGTTAGAAGCTAAGTTTGTTAAGATGACTGATATACAGAGGGCTTCTTTGCCCCATGTGCTTTGTGGGCGAGATATTTTGGGTGCATCAAAAACTGGGTCGGGAAAAACCTTGGCTTTCATTATTCCGGTCCTGGAAAAGTTGTATAGAGAGAAATGGGGGCCTGAAGATGGGGTAGGCAGCATCATTATATCCCCTACAAGAGAATTAGCTGGTCAACTGTTTGATGTTTTAAAAAGTGTAGGTAAGCACCATAATTTCAGTGCTGGCCTTCTGATTGGTGGTCGCAAGGATGTTGATGTGGAGAAAGAACATGTAAATGAGCTGAACATTTTGATCTGCACACCTGGTCGCCTTCTACAACACATGGATGAAACTCCTAACTTTGATTGTTCACCGATTCAGGTGTTGGTGCTTGATGAGGCAGATCGGATTCTTGACAGTGGATTTAAGAAGGAACTAAATGCTATAATATCACAGCTTCCAAAGCATAGACAGACCCTACTCTTCTCAGCAACTCAAACAAAGTCTGTTGAAGTTCTTGCAAGACTAAGTTTAAACGACCCAGAGTATCTGAGTGTCCATCAAGAGTCTGTGACTGCCACCCCCACTCTCTTGAGGCAGCTTGTGATGATTGTTCCTCTGGACCAAAAGTTAGACATGTTGTGGAGTTTCATAAAGTCCCATCTTAACTCCAAAATACTTGTCTTTCTCTCTAGTTGTAAACAGGTAAAATTTGTTTTTGAAGCATTTAAGAAACTTCGCCCCGGCATACCCTTGAAATGCCTTCATGGGAGGATGAAGCAGGAAAGAAGAATGGCAATATATTCTGAATTTTGTGAGAAGCGCTCAGTACTCTTCTCAACTGATGTGGCTGCAAGAGGGCTTGATTTTAACAAGGCAGTTGACTGGGTTGTTCAGGTTGATTGTCCTGAAAATGTAGCATCTTACATACACAGAGTTGGGAGAACTGCTCGCTACAAGTCTGGGGGTAGATCAGTTTTATTTTTGACGCCTTCAGAGATGAAAATGCTTGAGAAATTAGAAGCAGCTAAAGTTCCAGTACATCTTAATAAGCCTAAGAAGGAACGGCTGCAACCAGTTTCTGGTTTGTTAGCAGCATTACTGGTCAAGTACCCAGATCTCCAGCAATGGGCAAAAAGGGCCTTCATAACATATTTGAAATCCATTCATGTCCAGAAGGATAAAGAAATCTTTGATCTTATGAAATTGCCAATTGATGAATATTCAGCATCATTAGGTCTTCCCATGACCCCCAAAACTCGATTTCTCAACCAAAAAATGAAATCTAAAGCTGTGTCAACAAAACCAATTTTAGCTGAACCAGAAGATTCCCACAGAGAAATTGCATTGGAGGTTCAAAGAGAGAATCTCGATGTTAATGATTCTGAGGTGGAGGAAGAGAAAAAAGGTCTTCTTTTGCCGGATGATTCATCTGATGAAAAGGAAGGGAAAGCACCTGAAATTGTAGATGTCATACCACCAACCCGTGTTTCAAAGAAAAAGAAGCTCAAGATCAACATACATAGACCAATGGGGACTAGGGTTGTATTTGATGATGAAGGTAATGCTCTACCTCCACTAGCGAGGATTGCTGATACACAAACTGGCAAGGAAACATTGCTGCTTGATCCAGAACAAAAAGCTGAATACTATAGAAAGATGCGTGAGGAGTTGAAGAAGGTTGACAAGGAAGACAAGCTTGTGCAACAACAGCGTCAAAGAGAGAAGAGAATCAAGCGAAAGATGAAGTTGAAGGAAATAAGTGCTGAAAAGGATGATGATGACAACATTTCTGGGTCAGAAGGAGAAGGAGATGAAGTTGCAGATAGAAGGCATAAAAAGAGTAAGATATATTTTGATAGTGACAATGATGATGACACTGAAATCACAGAAGGGAAAGAGGGTATTATCTCTAAACCTGTTACTTTGGAGGAGCAAGAAGCATTGGCGCTGAAGTTGTTAAATTCCATGCACTCATAG 2244 0.4149 MRKPKSRDFHKQRRLAEEDEIKLLDSWIQSQKPDSGSNPMSFPPLSSKDPVGCIDGNTFSRYVGVTRFDQLPISKKTKDALLEAKFVKMTDIQRASLPHVLCGRDILGASKTGSGKTLAFIIPVLEKLYREKWGPEDGVGSIIISPTRELAGQLFDVLKSVGKHHNFSAGLLIGGRKDVDVEKEHVNELNILICTPGRLLQHMDETPNFDCSPIQVLVLDEADRILDSGFKKELNAIISQLPKHRQTLLFSATQTKSVEVLARLSLNDPEYLSVHQESVTATPTLLRQLVMIVPLDQKLDMLWSFIKSHLNSKILVFLSSCKQVKFVFEAFKKLRPGIPLKCLHGRMKQERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSGGRSVLFLTPSEMKMLEKLEAAKVPVHLNKPKKERLQPVSGLLAALLVKYPDLQQWAKRAFITYLKSIHVQKDKEIFDLMKLPIDEYSASLGLPMTPKTRFLNQKMKSKAVSTKPILAEPEDSHREIALEVQRENLDVNDSEVEEEKKGLLLPDDSSDEKEGKAPEIVDVIPPTRVSKKKKLKINIHRPMGTRVVFDDEGNALPPLARIADTQTGKETLLLDPEQKAEYYRKMREELKKVDKEDKLVQQQRQREKRIKRKMKLKEISAEKDDDDNISGSEGEGDEVADRRHKKSKIYFDSDNDDDTEITEGKEGIISKPVTLEEQEALALKLLNSMHS 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0150 747 CDD DEADc_DDX10 77 275 - -
Lele20g0150 747 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Lele20g0150 747 MobiDBLite consensus disorder prediction 28 47 - -
Lele20g0150 747 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 218 226 IPR000629 -
Lele20g0150 747 SMART ultradead3 85 289 IPR014001 -
Lele20g0150 747 SMART DUF4217_3 447 510 IPR025313 -
Lele20g0150 747 MobiDBLite consensus disorder prediction 28 44 - -
Lele20g0150 747 MobiDBLite consensus disorder prediction 691 711 - -
Lele20g0150 747 PANTHER RNA HELICASE 65 569 - -
Lele20g0150 747 Gene3D - 57 278 IPR027417 -
Lele20g0150 747 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724
Lele20g0150 747 SMART helicmild6 325 408 IPR001650 -
Lele20g0150 747 Coils Coil 639 659 - -
Lele20g0150 747 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 428 IPR027417 -
Lele20g0150 747 Pfam Helicase conserved C-terminal domain 298 407 IPR001650 -
Lele20g0150 747 Gene3D - 284 527 IPR027417 -
Lele20g0150 747 MobiDBLite consensus disorder prediction 652 721 - -
Lele20g0150 747 Pfam DEAD/DEAH box helicase 90 259 IPR011545 GO:0003676|GO:0005524
Lele20g0150 747 Pfam Domain of unknown function (DUF4217) 452 507 IPR025313 -
Lele20g0150 747 MobiDBLite consensus disorder prediction 545 572 - -
Lele20g0150 747 CDD SF2_C_DEAD 286 417 - -
Lele20g0150 747 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 294 456 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0150 Lele-ChrLele20 8798281 8803971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0150 65 429 Eukaryotic Initiation Factors Gene Family AT3G19760 29.301 2.82e-39 148