Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0125 ATGAGTCTGGTGGGCTTATTGGGATATGCAGAATTAACAAGTGAACAGTATTATCAGAAAATTGGAGAGAAACTTGTCCCTTACTGGAAGATGACCGTCGACCCCCAGTCTTCCAACAATAAGAACTGGGTTTCCATCAATGTAAAGCCAGGCATCTGTAGGGAAAAAGTGAGGATTCCTGATGATAAGCCATATATAGTATTGAAAGGAGTAGCGAAGAGGAGCACTATTGTAAATTCCTACAACAATCCGATTAACAGCAACCAGAGGAAACCGGCGGTGGTGGCAATGGTGGCCAGCGATAAGGCTTTCTTCTTTCGAGTGGGCTTCTTTGGTTTACAAGACACCTTGTGGGATGATCAAGGAAGGCATTACTATAACCTTTGTACCATTCAAGGTGCTGTTGATTTTATTTTTGGTGCTGCCCAATCTGTATTTGAGGTAAAACTCTTCCACTTTAACTTATTCTCCCTTTTAGTTTACCCTTAA 489 0.4172 MSLVGLLGYAELTSEQYYQKIGEKLVPYWKMTVDPQSSNNKNWVSINVKPGICREKVRIPDDKPYIVLKGVAKRSTIVNSYNNPINSNQRKPAVVAMVASDKAFFFRVGFFGLQDTLWDDQGRHYYNLCTIQGAVDFIFGAAQSVFEVKLFHFNLFSLLVYP 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0125 162 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 37 147 - -
Lele20g0125 162 Pfam Pectinesterase 89 147 IPR000070 GO:0030599|GO:0042545
Lele20g0125 162 ProSitePatterns Pectinesterase signature 2. 131 140 IPR033131 -
Lele20g0125 162 Gene3D - 30 74 IPR012334 -
Lele20g0125 162 Gene3D - 75 155 IPR012334 -
Lele20g0125 162 SUPERFAMILY Pectin lyase-like 36 147 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0125 Lele-ChrLele20 8361931 8364039 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0125 33 147 Carbohydrate Esterase AT2G19150 38.194 1.38e-25 97.1