Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0118 ATGTGGTGCTTGCTCTGCCCACTGGGTCGCCCTCTCTACAGGTATTCAGAGATGGAGTCTCTTGGTTTTGTGGATGACCTCCTGAATTTCTCATCTGACGTAGGTGAAGAAGATGACGAGGAAGATAAACCCAGGAAAGCCCTGTCTTCTCTTAGCCTTAAATGTAGTGATGCAGCATCATTAAATGCTTTGGAAGCAGATGACCCAACCCGTTCATTTTCTGAGTTTGCAGAAGAAGAGCTTGAATGGCTATCCAACAAAGATGCTTTCCCAGCTGTCGAAACATGTACTGACATGCTCTCTATTCAACCAAACTTATCGAAGCCCCAAACCCCAGTCTCAACCCTTGAATACAGTGCAAGTAGTATCAGCAGTAATAACAGTGCTAACAATGTTACCCTCTTAAATGGCTTCAATCACGTGAAGGTTCCTGTCCGAGCACGAAGCAAGCGTTGTAATAGGCAACCCCGTGGTGTTGCTGACATATCCAGCCGGCAGTTTTGGTGGATCCAACCGAGTAACACTATTAGCAAACCAGAAGCAATGATAACAGTCTCAGTAATAGGGAGGAAGTGCCAGCACTGTGGAGCAGAAAAAACTCCACAGTGGCGGGCAGGACCCCTTGGGCCAAAAACCCTTTGCAATGCATGTGGGGTTAGGTATAAGTCTGGGCGGCTTTTGCCAGAGTACCGCCCAGCAAGTAGCCCTACATTCCGTTGTGAATTGCATTCAAATTCCCACAGTAAGGTAGTTGAGATGAGAAAGCAAAAACAAATGGGAAGCCAGGGATGA 792 0.4697 MWCLLCPLGRPLYRYSEMESLGFVDDLLNFSSDVGEEDDEEDKPRKALSSLSLKCSDAASLNALEADDPTRSFSEFAEEELEWLSNKDAFPAVETCTDMLSIQPNLSKPQTPVSTLEYSASSISSNNSANNVTLLNGFNHVKVPVRARSKRCNRQPRGVADISSRQFWWIQPSNTISKPEAMITVSVIGRKCQHCGAEKTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPASSPTFRCELHSNSHSKVVEMRKQKQMGSQG 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0118 263 CDD ZnF_GATA 191 240 IPR000679 GO:0006355|GO:0043565
Lele20g0118 263 FunFam GATA transcription factor 183 263 - -
Lele20g0118 263 Gene3D - 188 261 IPR013088 GO:0006355|GO:0008270
Lele20g0118 263 PANTHER GATA TRANSCRIPTION FACTOR 24 258 - -
Lele20g0118 263 SMART GATA_3 186 236 IPR000679 GO:0006355|GO:0043565
Lele20g0118 263 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 189 249 - -
Lele20g0118 263 ProSiteProfiles GATA-type zinc finger domain profile. 186 222 IPR000679 GO:0006355|GO:0043565
Lele20g0118 263 Pfam GATA zinc finger 192 226 IPR000679 GO:0006355|GO:0043565
Lele20g0118 263 ProSitePatterns GATA-type zinc finger domain. 192 217 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0118 Lele-ChrLele20 8258473 8269804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0118 17 260 C2C2-Gata Transcription Factor Family AT3G24050 43.431 2.08e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele20g0118 GATA 1.2e-16 CL0167