Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0108 ATGAGGACTTCTAGAACAAAAAATCAAGATGTCGTAGATGCAACCATTGTTAGAATGCTTACTGATCCAGAAGAGGCACGAGCTGGGATTACACAGGTCCACTTTTTGCCATTCAACCCTGTGGACCAGAGAACTGCTTTGACTTATATTGATTCAGATAGAAGTTGGCACAGGGCCAGCAAAGGTGCTCCTGAGCAGGAAGTTCCTGAGAGAACCAAAGAAAGTTCCAGTGGTCCATGGCAATTTGTCTGCTTGTTGCCACTATTTGATCCCCTTAGGCATGATAATGCTCATACCATTCAAGGAGTTCTTAATCTTGGTGTAAATGTCAATATGATTACTGGCGATCAACTTGCCATAGCTAAGGAGATTGGTGGGATACATGGGATGGGAACAGATATGTATCCATTTGCTTCTTTGCTTGGACAAGGCATAGATGCAAATATCGTGGCACTTCCTGTAGAAGAGCTGATCAAGAAGGTCGATGGATTTGCTGGACTATTTCCTGAGCACAAATATGAAATTGTGAAGAAGTTACAAGAAAGGAAGCATACTTGTGGAATGATTGGAAATGGCGTCAATGATGTGCCTGCCTTGAAGAAGGCCAATATTGGAATTGCCACTCCTAATGCCATGCCACTGATGCCGCAACAATCCCTTCTGACATTATCCTAA 675 0.4311 MRTSRTKNQDVVDATIVRMLTDPEEARAGITQVHFLPFNPVDQRTALTYIDSDRSWHRASKGAPEQEVPERTKESSSGPWQFVCLLPLFDPLRHDNAHTIQGVLNLGVNVNMITGDQLAIAKEIGGIHGMGTDMYPFASLLGQGIDANIVALPVEELIKKVDGFAGLFPEHKYEIVKKLQERKHTCGMIGNGVNDVPALKKANIGIATPNAMPLMPQQSLLTLS 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0108 224 FunFam ATPase 2, plasma membrane-type 84 222 - -
Lele20g0108 224 PRINTS H+-transporting ATPase (proton pump) signature 161 177 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele20g0108 224 PRINTS H+-transporting ATPase (proton pump) signature 189 205 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele20g0108 224 Gene3D - 67 89 IPR023299 GO:0000166
Lele20g0108 224 Gene3D - 1 66 IPR023299 GO:0000166
Lele20g0108 224 PRINTS P-type cation-transporting ATPase superfamily signature 106 116 - -
Lele20g0108 224 PRINTS P-type cation-transporting ATPase superfamily signature 84 95 - -
Lele20g0108 224 PRINTS P-type cation-transporting ATPase superfamily signature 189 208 - -
Lele20g0108 224 MobiDBLite consensus disorder prediction 56 75 - -
Lele20g0108 224 Pfam haloacid dehalogenase-like hydrolase 85 203 - -
Lele20g0108 224 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 16 93 IPR023299 GO:0000166
Lele20g0108 224 Gene3D - 90 211 IPR023214 -
Lele20g0108 224 PANTHER CALCIUM-TRANSPORTING ATPASE 2 70 - -
Lele20g0108 224 SUPERFAMILY HAD-like 83 215 IPR036412 -
Lele20g0108 224 MobiDBLite consensus disorder prediction 56 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0108 Lele-ChrLele20 7957673 7959212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0108 4 211 Primary Pumps ATPases AT2G18960 62.963 6.56e-99 305