Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele20g0084 | ATGGGCCAATTGTATTGGATTGGATCTATCCCACATCGCTGCAAATGCGCCCCAATTAATGCTGTTTGGTTGAGGGTATATACCTATTTTCTTCACTTCCCGAAGGAATCCACCTCTCCGCGTTCTCTCCTCAATACGAAGCTCCATTCAAGTGAAAATAGATTTGAAGGCTCTGCATTCGTGGGTTCATGTTTGAGTTTCATTTCTGCTGATCTTCCTCTCTTCTCGTTATTCTTTACTGTCTCTACAGTCTCCGGCGAGGTGCCAGAAGAACCAGTGGTGTCGAGGAAGTCTGGATTGCTCTATGAGAAGCGTTTAATTGAGAGGCACATTGCGGACTATGGAAAGTGTCCAATTACCGGAGAACCTCTTACTTCAGATGACATTGTTCAAATAAAAACAGGCAAGATAGTGAGGCCAAGGCCTGTACAGGCAGCAAGTATCCCGGGCATGCTTGGAATGTTCCAAAATGAATGGGATGGATTGATGCTGTCTAACTTTGCATTAGAGCAGCAACTACACACAGCAAGGCAAGAGCTAAGTCATGCTCTATATCAACATGATGCTGCTTGCCGAGTGATTGCAAGGCTTAAAAAGGAAAGGGATGAAGCAAGGTCATTCCTTGCACAAGCAGAAAGGCAGTTCCCTGTTTCCACGCAAAATACAATGACAGCAAATGCTGTTGCTCTGAGCAATGGGAAAAGAGCTGCCGAAGATGAGGAACAGGCCCCTGGTGGGAAGAAATTACATACTGGAATCACTAGTGCCATAATTGATGAGCTGACTGAGTGTAATGCATCTCTGTCGCAGCAGAGGAAAAAGCGGCAGATTCCTGCAACTTTGGCTCCTGTTGAGGCTTTAGAGGGATATACCCAGATATCCAGTCATCCCTTTCACAAAACGAGCAAACCAGGGATTGTATCTATGGATATCCTTTATTCTAAGGATTTAATTGCCACTGGAGGGCTAGATACAAATGCTGTGATTTTTGACCGGTCATCAGGGCAGATATTATCCACATTCAGTGGTCACTCAAAAAAGGTTACAAGTGTGAAATTTGTAGCTCAGGGCGATCAGTTTATAACTGGTTCAGCAGACAAGACAGTTCGTTTGTGGCAAAGCTCAGATGATGGTAACTACATCTGCAGACATGTATTGAAGGATCACACAGCCGAGGTGCAAGCAGTCACTGTCCATGCTACTAACAACTACTTTGTCACTGCTTCCCTTGACAGCACATGGTGTTTTTATGAAATTTCTTCAGGGACATGTCTGAATCAGGTTTCAGACTCTTCTGGATCTTCTGGAGGCTATACATCTGCAGCTTTTCATCCTGACGGTCTCATTCTTGGAACTGGCACAGCGGAAGCTCTTGTTAAGATCTGGGATGTAAAAAGTCAGGCAAATGTTGCTAGGTTTGATGGACATGTAGGGGCGGTGACAGCTATATCCTTTTCTGAGAATGGTTACTTCCTTGCGACTGCAGCCCATGATGGTGTAAAACTATGGGATCTTCGTAAACTGAAAAACTTCCGGACTTTTGCTCCATATGATCCAGACATTCCAACAAATTCAGTGGAATTCGACCATAGCGGTTCCTACCTTGGAGTTGCAGGATCTGATGTTAGGATTTACCAAGTTGCAAACGTGAAATCTGAATGGAACTGTATTAAAACTTTCCCTGATTTGTCTGGAACAGGGAAAGCCACCTGTGTTAAATTTGGTCCAGATGCTAAATATGTAGCAGTCGGATCAATGGACCGTAATCTTCGAATATTTGGCCTGCCCAGTGAAGATGGGAATACTAAGTCATAA | 1815 | 0.4419 | MGQLYWIGSIPHRCKCAPINAVWLRVYTYFLHFPKESTSPRSLLNTKLHSSENRFEGSAFVGSCLSFISADLPLFSLFFTVSTVSGEVPEEPVVSRKSGLLYEKRLIERHIADYGKCPITGEPLTSDDIVQIKTGKIVRPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSFLAQAERQFPVSTQNTMTANAVALSNGKRAAEDEEQAPGGKKLHTGITSAIIDELTECNASLSQQRKKRQIPATLAPVEALEGYTQISSHPFHKTSKPGIVSMDILYSKDLIATGGLDTNAVIFDRSSGQILSTFSGHSKKVTSVKFVAQGDQFITGSADKTVRLWQSSDDGNYICRHVLKDHTAEVQAVTVHATNNYFVTASLDSTWCFYEISSGTCLNQVSDSSGSSGGYTSAAFHPDGLILGTGTAEALVKIWDVKSQANVARFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFAPYDPDIPTNSVEFDHSGSYLGVAGSDVRIYQVANVKSEWNCIKTFPDLSGTGKATCVKFGPDAKYVAVGSMDRNLRIFGLPSEDGNTKS | 604 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele20g0084 | 604 | CDD | RING-Ubox_PRP19 | 81 | 133 | - | - | |
| Lele20g0084 | 604 | SUPERFAMILY | WD40 repeat-like | 302 | 593 | IPR036322 | GO:0005515 | |
| Lele20g0084 | 604 | FunFam | Pre-mRNA-processing factor 19, putative | 80 | 137 | - | - | |
| Lele20g0084 | 604 | Gene3D | - | 281 | 595 | IPR015943 | GO:0005515 | |
| Lele20g0084 | 604 | ProSiteProfiles | U-box domain profile. | 85 | 149 | IPR003613 | GO:0004842|GO:0016567 | |
| Lele20g0084 | 604 | CDD | WD40 | 305 | 593 | - | - | |
| Lele20g0084 | 604 | Pfam | WD domain, G-beta repeat | 469 | 504 | IPR001680 | GO:0005515 | |
| Lele20g0084 | 604 | Pfam | WD domain, G-beta repeat | 335 | 372 | IPR001680 | GO:0005515 | |
| Lele20g0084 | 604 | Pfam | WD domain, G-beta repeat | 554 | 593 | IPR001680 | GO:0005515 | |
| Lele20g0084 | 604 | Coils | Coil | 194 | 214 | - | - | |
| Lele20g0084 | 604 | SMART | WD40_4 | 553 | 594 | IPR001680 | GO:0005515 | |
| Lele20g0084 | 604 | SMART | WD40_4 | 466 | 504 | IPR001680 | GO:0005515 | |
| Lele20g0084 | 604 | SMART | WD40_4 | 289 | 331 | IPR001680 | GO:0005515 | |
| Lele20g0084 | 604 | SMART | WD40_4 | 507 | 546 | IPR001680 | GO:0005515 | |
| Lele20g0084 | 604 | SMART | WD40_4 | 421 | 463 | IPR001680 | GO:0005515 | |
| Lele20g0084 | 604 | SMART | WD40_4 | 334 | 373 | IPR001680 | GO:0005515 | |
| Lele20g0084 | 604 | SMART | WD40_4 | 379 | 418 | IPR001680 | GO:0005515 | |
| Lele20g0084 | 604 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 81 | 139 | IPR013083 | - | |
| Lele20g0084 | 604 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 341 | 373 | - | - | |
| Lele20g0084 | 604 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 431 | 466 | - | - | |
| Lele20g0084 | 604 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 473 | 513 | IPR001680 | GO:0005515 | |
| Lele20g0084 | 604 | SMART | Ubox_2 | 79 | 145 | IPR003613 | GO:0004842|GO:0016567 | |
| Lele20g0084 | 604 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 386 | 427 | IPR001680 | GO:0005515 | |
| Lele20g0084 | 604 | Pfam | Prp19/Pso4-like | 145 | 210 | IPR013915 | - | |
| Lele20g0084 | 604 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 341 | 373 | IPR001680 | GO:0005515 | |
| Lele20g0084 | 604 | FunFam | pre-mRNA-processing factor 19 | 278 | 595 | - | - | |
| Lele20g0084 | 604 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 431 | 472 | IPR001680 | GO:0005515 | |
| Lele20g0084 | 604 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 473 | 506 | - | - | |
| Lele20g0084 | 604 | SUPERFAMILY | RING/U-box | 84 | 132 | - | - | |
| Lele20g0084 | 604 | PANTHER | PRE-MRNA-PROCESSING FACTOR 19 | 84 | 596 | IPR038959 | GO:0000398|GO:0000974|GO:0006281|GO:0061630 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele20g0084 | Lele-ChrLele20 | 6914059 | 6925217 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele20g0084 | 84 | 604 | U-box Gene Family | AT1G04510 | 73.563 | 0.0 | 807 |