Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0063 ATGCCCTCACCTCACCTCTCCAATCTTTCCGTCTCACTTTACTCGATAGATCTCGTTTCCATGGACCTTGGTGGAGTAGTTCGTAAGAGGGGAAGGCCTGAAGCTCCCTTTAATGGCAATGGCGGCGTCAAGAAATCCCGGCCAGAAATGGAGTCCTTTCCTACTGGTTTAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGCACCTCTGGTTGCCCATTTGGCGAAGGATGTCATTTCTTGCATTATGTGCCTGGGGGTATAAAAGCTGTCTCTCAGATGATCAATGTTGGTACCAATCCTGCACTTCCACAAGCTCCCAGAAATACAACTTTTCCACCATCCTTTCCAGATGGCTCCTCCCCTCCGGCTGTTAAAACCCGCATATGCAACAAGTATAATACCGCCGAAGGTTGCAAATTTGGCGAGAAATGCCACTTCGCCCATGGTGAGTGGGAGCTTGGAAAGCCAACAATCCCATCACATGATGATCCTCGTTCCATGGGACAAATGCAAAGCCGGGTTGGTGGGCGGGTCGAGCACCCACCTGTAGTTCATGGAGCTGCAGCCAGCTTTGGAGCCTCTGCTACCGCTAAGATTAGTATCAATGCTTCGCTTGCTGGAGCGATCATTGGAAAAAATGGTGTCAATTCTAAGCAAATTTGTCGTGTGACAGGAGCAAAACTTTCAATACGGGATCATGAATCAGATCCAAGTCTCAAGAACATTGAGCTGGAGGGCAGCTTTGATCAGATCAAACAAGCAAGTGCTATGGTTCGTGAACTTATTGTAAATGTTGGTTCTGTCTCTGGGCCTCCTCCGAAAAGCATGGCACCACAGGGCCCTGCCCCAGCTAACAATTTCAAGACAAAACTGTGTGAAAACTTTGCGAAAGGATCCTGCACTTTTGGGGAAAGGTGCCATTTCGCACACGGAGCCGAAGAATTACGCAAGTCTGGAATGTGA 969 0.484 MPSPHLSNLSVSLYSIDLVSMDLGGVVRKRGRPEAPFNGNGGVKKSRPEMESFPTGLGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGIKAVSQMINVGTNPALPQAPRNTTFPPSFPDGSSPPAVKTRICNKYNTAEGCKFGEKCHFAHGEWELGKPTIPSHDDPRSMGQMQSRVGGRVEHPPVVHGAAASFGASATAKISINASLAGAIIGKNGVNSKQICRVTGAKLSIRDHESDPSLKNIELEGSFDQIKQASAMVRELIVNVGSVSGPPPKSMAPQGPAPANNFKTKLCENFAKGSCTFGERCHFAHGAEELRKSGM 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0063 322 CDD KH-I 200 260 - -
Lele20g0063 322 ProSiteProfiles Zinc finger C3H1-type profile. 58 86 IPR000571 GO:0046872
Lele20g0063 322 Pfam RNA-binding, Nab2-type zinc finger 63 83 - -
Lele20g0063 322 ProSiteProfiles Type-1 KH domain profile. 196 260 - -
Lele20g0063 322 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 191 269 IPR036612 GO:0003723
Lele20g0063 322 FunFam Zinc finger CCCH domain-containing protein 120 157 - -
Lele20g0063 322 Pfam KH domain 199 262 IPR004088 GO:0003723
Lele20g0063 322 SUPERFAMILY CCCH zinc finger 124 156 IPR036855 GO:0046872
Lele20g0063 322 SMART c3hfinal6 125 152 IPR000571 GO:0046872
Lele20g0063 322 SMART c3hfinal6 288 314 IPR000571 GO:0046872
Lele20g0063 322 SMART c3hfinal6 58 85 IPR000571 GO:0046872
Lele20g0063 322 Gene3D - 120 157 - -
Lele20g0063 322 Gene3D - 287 320 - -
Lele20g0063 322 SUPERFAMILY CCCH zinc finger 288 318 IPR036855 GO:0046872
Lele20g0063 322 Gene3D K Homology domain, type 1 192 286 IPR036612 GO:0003723
Lele20g0063 322 ProSiteProfiles Zinc finger C3H1-type profile. 125 153 IPR000571 GO:0046872
Lele20g0063 322 SUPERFAMILY CCCH zinc finger 59 84 IPR036855 GO:0046872
Lele20g0063 322 SMART kh_6 195 265 IPR004087 GO:0003676
Lele20g0063 322 PANTHER CCCH ZINC FINGER/TIS11-RELATED 44 178 IPR045877 GO:0003729
Lele20g0063 322 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 127 152 IPR000571 GO:0046872
Lele20g0063 322 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 289 313 IPR000571 GO:0046872
Lele20g0063 322 FunFam Zinc finger CCCH domain-containing protein 283 319 - -
Lele20g0063 322 ProSiteProfiles Zinc finger C3H1-type profile. 288 315 IPR000571 GO:0046872
Lele20g0063 322 MobiDBLite consensus disorder prediction 29 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0063 Lele-ChrLele20 6058404 6064233 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele20g0063 KH_1 1.7e-10 CL0007