Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0058 ATGTCATCGTCGGCGAACCCACCTTGCTCGGCTTGCAAGATGCAGAGGAGGAAATGCACGCCAGGATGTGTATTTGCGCCATATTTTCCAGCGGACAATCCTCGGAAATTTGCTTCCGTGCACAAGGTTTTTGGGGCCAGTAATGTGGCCAAGATTCTGAACGATGTTAGCGTGGCGCAGCGTGAGGACACTGTCAGATCATTGGCTTATGAGGCGGAGGCCCGCCTCCGGGACCCGGTATACGGCTGCGTCGGCATCATCTCTGTCCTCCAGCACCGGCTGTATCAGCTGCAGAGTGAACTCACCAACGCCAGAAAAGAGCTAGCTGCCTGTATTGGTCCACAGGCCTTGCTTCCCAACCACTTGGTGGAATTCAATCGGCAAGAGGTTTTGACTTTCAATGTCGGCAGTAGTGGCGGCGGCCGAGTCGACCATGGCAGTAGATACCCACTGGACGGAACCCTTGTCTCTCATCAGGTTGAAGCACATCATCAGGTTGAGGTGCAATCTCAGCAATGGACTTTGTCACAGAAACGGGAGGCAAGTAGAGCTGTGGGTATGTGA 564 0.5408 MSSSANPPCSACKMQRRKCTPGCVFAPYFPADNPRKFASVHKVFGASNVAKILNDVSVAQREDTVRSLAYEAEARLRDPVYGCVGIISVLQHRLYQLQSELTNARKELAACIGPQALLPNHLVEFNRQEVLTFNVGSSGGGRVDHGSRYPLDGTLVSHQVEAHHQVEVQSQQWTLSQKREASRAVGM 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0058 187 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Lele20g0058 187 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Lele20g0058 187 Coils Coil 87 107 - -
Lele20g0058 187 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0058 Lele-ChrLele20 5541467 5542030 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0058 1 119 AS2 family AT5G66870 70.588 5.27e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lele20g0058 LOB 3.5e-41 No_clan