Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele20g0037 | ATGCGTCATATTGCTCTGGTTACAAGGCAGGGAGAGGTTTTTTCTTGGGGTGAGGAATTTGGGGGAAGACTTGGTCATGGGATTGATAAAGATTTTTGCCACCCCCATCTTATTGAGTCCCTCTCCCTTCAAAATGTTGACTTTATTGCGTGCGGGGAGTATCATACATGTGCTATTTCTACGTCAGGTGATCTATTCACATGGGGAGATGGTGCTCATAATGCCGGGCTTCTTGGTCATGGCAGTGATGTTAGTCATTGGATGCCAAAGAGGGTCACTGGCCCTTTAGAAGGTCTTCAAGTTTTATCAGTTTCATGTGGTACATGGCATTCTGCATTAGCAACCTCTAACGGGAAATTATTTACCTTTGGTGATGGAACATTTGGTGTGTTGGGCCATGGCGATCGGAGGAGTGTGTCATATCCAAGGGAGGTACAATCATTGAGCGGACTCAAGACTATTAAAGTTGCTTGTGGAGTATGGCACACTGCAGCTATTGTAGAGGTTATGGGTCATCAAGGTTCTAATATTTCATCGAGGAAGCTCTTCACTTGGGGTGATGGTGACAAGTATCGCTTGGGTCATGGAAACAAGGAAACGTACCTTCAACCGACCTGTGTTTCTGCACTAATTGATTATAATTTCCACCAGATAGCTTGTGGCCACACTCTGACTGTTGCCTTAGATACATCAGGTTTTGTATTTACTATGGGTGGCACTACATATGGTCAATTAGGAAATGCTTTGTCTGATGGAAAAACACCTGTAAAGGTTCAAGATAAGTTAGTTGGTGAATTTGTTGAGGAAATATCATGTGGAGCACATCATGTTGCTGTTTTGACGTCAAGAAGTGAATTATATACCTGGGGCAGGGGAGCGAATGGAAGATTGGGGCATGGAGATACAGAAGACCGAAAATCTCCAACACTAGTTGAAGGTTTAAAAGATAGGCATGTGAAAAATATCTCGTGTGGCTCAAATTTTACATCTTGCATATGCATCCATAAATGGGTCTCTGGATCTGATCAATCTGTTTGCTCTGGTTGTCGCCAAGCATTTGGTTTTACTAGAAAAAGGCATAATTGTTATAATTGTGGCTTGGTGCATTGCCATGCTTGCAGTTCCAAGAAGGCTTTAAGGGCAGCATTGGCTCCAACACCAGGAAAACCACATCGTGTGTGTGATGCTTGTTATGGTAAGCTTAAAGCTACTGAGAGCGCTAGTGCTTCCACTTTTAATAGGAAACCCACTCCTCCTCGTCAATCCCTAGATGGCAAGGAAAGATTAGATCGGGGAGAAGTAAGGTCGTCAAGAATTCTCATGTCTTCCGTCAGTGAGCCAATAAAATTCCTTGAGATATGGGGAAACAAGCCAGAATCTAAACATGACTTTTCTTCCCTTGCCCGTACTCCACAACAATTCAAAGATGCTGCATTTCCAAGTTCATTGAAGCCCATTCATAATGCTTTCAAGCCTGCTTCTGTAACTTTAAGTCCACCACGAACTCCACTAGCCAATTCACGACCTGCATCGCCATATACAAGAAGACCAAGTCCACCACGATCTGGCACCCCTGGATTTTCTAGAAGCATGATTGAAAATTTGAGCAAGTCGAATGAGCTTATGAACCAAGAACTCTCAAAATTACAAAATCAAATTCAAAATTTGAAGCAGAAGAACGACATGCAAGATATGGAGATTCAGAAGCTGAAGAAAAATGTTAAGGAAGCTACCCTGTTGACTGGAGAGGAATCTTCTAAGCATAGGCTAGCTAGGGAATTTATTAAGAACATGACAGATCAGTTGAAAGATGTGACACAGAATTTGCCACCAGACAATACAGACAATGAGACCTTGAGAAATATCCATGCTCAAGCTGAAGATTTTCTAAGAGAAAATCTAGAATCTGAAGCATCATCATCTTTCATACTTTCAAACTTAGAGTTTAATCAAGAAATCGGACCCAATACGCTAGCTTCAGATATTGGTGGTTCTAAATTGCAAGAAAATAAACTTGAAGAAGCTATCGATCCTTCTGGAGATAGATCATCTGTATCTAGTATAGAGGCTTCAACTCCTCCACAAAGCATAGAAAATGGTTCACAATCACCAGACTCTATGAGACTAAGGAGAGAAAAAGAATCACCGGTCATCGAACAATTTGAACCTGGTGTTTATGTGACGCTAGTAGTATTGCCAAGTGGTATAAAACTTTTCAAACGAGTTAGATTCAGTAAGCGAAGGTTCGTTGCACAGCAGGCAGAAGAATGGTGGAACAAAAACAAAGATAGGGTGTTTAGAAAGTACAGTTCACCAACAAGAAATCAGGCAGCTACTGGGTCATCATCAAGCAATCAACCCTTCGCTGAAGAGAACACGGAACCTTCTTGA | 2391 | 0.4178 | MRHIALVTRQGEVFSWGEEFGGRLGHGIDKDFCHPHLIESLSLQNVDFIACGEYHTCAISTSGDLFTWGDGAHNAGLLGHGSDVSHWMPKRVTGPLEGLQVLSVSCGTWHSALATSNGKLFTFGDGTFGVLGHGDRRSVSYPREVQSLSGLKTIKVACGVWHTAAIVEVMGHQGSNISSRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIDYNFHQIACGHTLTVALDTSGFVFTMGGTTYGQLGNALSDGKTPVKVQDKLVGEFVEEISCGAHHVAVLTSRSELYTWGRGANGRLGHGDTEDRKSPTLVEGLKDRHVKNISCGSNFTSCICIHKWVSGSDQSVCSGCRQAFGFTRKRHNCYNCGLVHCHACSSKKALRAALAPTPGKPHRVCDACYGKLKATESASASTFNRKPTPPRQSLDGKERLDRGEVRSSRILMSSVSEPIKFLEIWGNKPESKHDFSSLARTPQQFKDAAFPSSLKPIHNAFKPASVTLSPPRTPLANSRPASPYTRRPSPPRSGTPGFSRSMIENLSKSNELMNQELSKLQNQIQNLKQKNDMQDMEIQKLKKNVKEATLLTGEESSKHRLAREFIKNMTDQLKDVTQNLPPDNTDNETLRNIHAQAEDFLRENLESEASSSFILSNLEFNQEIGPNTLASDIGGSKLQENKLEEAIDPSGDRSSVSSIEASTPPQSIENGSQSPDSMRLRREKESPVIEQFEPGVYVTLVVLPSGIKLFKRVRFSKRRFVAQQAEEWWNKNKDRVFRKYSSPTRNQAATGSSSSNQPFAEENTEPS | 796 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele20g0037 | 796 | MobiDBLite | consensus disorder prediction | 680 | 704 | - | - | |
| Lele20g0037 | 796 | MobiDBLite | consensus disorder prediction | 675 | 713 | - | - | |
| Lele20g0037 | 796 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 717 | 769 | IPR013591 | - | |
| Lele20g0037 | 796 | SMART | fyve_4 | 334 | 403 | IPR000306 | GO:0046872 | |
| Lele20g0037 | 796 | MobiDBLite | consensus disorder prediction | 768 | 796 | - | - | |
| Lele20g0037 | 796 | Pfam | FYVE zinc finger | 336 | 401 | IPR000306 | GO:0046872 | |
| Lele20g0037 | 796 | MobiDBLite | consensus disorder prediction | 492 | 529 | - | - | |
| Lele20g0037 | 796 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 63 | 117 | IPR000408 | - | |
| Lele20g0037 | 796 | SUPERFAMILY | RCC1/BLIP-II | 2 | 337 | IPR009091 | - | |
| Lele20g0037 | 796 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 118 | 169 | IPR000408 | - | |
| Lele20g0037 | 796 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 156 | 166 | IPR000408 | - | |
| Lele20g0037 | 796 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 285 | 332 | IPR000408 | - | |
| Lele20g0037 | 796 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 182 | 228 | IPR000408 | - | |
| Lele20g0037 | 796 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 62 | 113 | IPR000408 | - | |
| Lele20g0037 | 796 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 232 | 280 | IPR000408 | - | |
| Lele20g0037 | 796 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 11 | 59 | IPR000408 | - | |
| Lele20g0037 | 796 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 117 | 166 | IPR000408 | - | |
| Lele20g0037 | 796 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 180 | 231 | IPR000408 | - | |
| Lele20g0037 | 796 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 284 | 335 | IPR000408 | - | |
| Lele20g0037 | 796 | CDD | FYVE_like_SF | 346 | 398 | - | - | |
| Lele20g0037 | 796 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 232 | 283 | IPR000408 | - | |
| Lele20g0037 | 796 | ProSiteProfiles | BRX domain profile. | 715 | 770 | IPR013591 | - | |
| Lele20g0037 | 796 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 2 | 608 | - | - | |
| Lele20g0037 | 796 | Gene3D | - | 175 | 335 | IPR009091 | - | |
| Lele20g0037 | 796 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 340 | 402 | IPR017455 | - | |
| Lele20g0037 | 796 | SUPERFAMILY | FYVE/PHD zinc finger | 336 | 408 | IPR011011 | - | |
| Lele20g0037 | 796 | PRINTS | Chromosome condensation regulator RCC1 signature | 63 | 79 | IPR000408 | - | |
| Lele20g0037 | 796 | PRINTS | Chromosome condensation regulator RCC1 signature | 104 | 120 | IPR000408 | - | |
| Lele20g0037 | 796 | PRINTS | Chromosome condensation regulator RCC1 signature | 279 | 300 | IPR000408 | - | |
| Lele20g0037 | 796 | PRINTS | Chromosome condensation regulator RCC1 signature | 13 | 29 | IPR000408 | - | |
| Lele20g0037 | 796 | PRINTS | Chromosome condensation regulator RCC1 signature | 120 | 134 | IPR000408 | - | |
| Lele20g0037 | 796 | PRINTS | Chromosome condensation regulator RCC1 signature | 221 | 239 | IPR000408 | - | |
| Lele20g0037 | 796 | MobiDBLite | consensus disorder prediction | 770 | 796 | - | - | |
| Lele20g0037 | 796 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 336 | 413 | IPR013083 | - | |
| Lele20g0037 | 796 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 11 | 62 | IPR000408 | - | |
| Lele20g0037 | 796 | Coils | Coil | 532 | 573 | - | - | |
| Lele20g0037 | 796 | MobiDBLite | consensus disorder prediction | 408 | 431 | - | - | |
| Lele20g0037 | 796 | Pfam | Transcription factor BRX N-terminal domain | 583 | 618 | IPR027988 | - | |
| Lele20g0037 | 796 | Gene3D | - | 74 | 174 | IPR009091 | - | |
| Lele20g0037 | 796 | Gene3D | - | 1 | 73 | IPR009091 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele20g0037 | Lele-ChrLele20 | 1975130 | 1979849 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele20g0037 | 718 | 778 | Major Intrinsic Protein MIP | AT1G31880 | 39.344 | 7.65e-09 | 56.6 |