Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0036 ATGGGGCAAGCGCAATCTAAGAGCGAGCTTCTTTACCAGCAAGTCAGTTATGGGAACGTCGAAGGAATGAAAGCCCTTCATAGGGAGGGAGCAGGACTAGATTGGGTGGATAGAGAAGGAAAGACGCCTTTGATTGTTGCTTGTATGAACCCTGAGCTGTATGATGTCGCCAAAACATTGATTGAACTTGGTGCCAATGTCAATGCATACCGTCCGGGACGACATGCTGGCACTCCATTGCATCATGCAGCTAAAAGAGGCATTGAAAGTATTGTTACGTTGCTTCTTTTGCATGGAGCTAATGCATTGGTCATAAATGACGATTGCCAAACTGCTCTTGATGTTGCGAGAGCCAAGGGCCACGGTAATGTTGTTCGTGCTATTGAGAGTCATCTTTGCTTGTTCTCTGGTTGGCTGCGGGAGTTCCATGGACCTGGATTCCTAGAAGTAGTAGCTCCACAGCTAGTATCTAAGAAAGTTTGGGTAGTTGTTTTACCAGTTGGCTCTCGGAATCTTACCAGACCCTACAAGCTGGAGCTTGCCATATATTCCATCACGCAGGATGCACAGCCGCGGACAGTTATTTCTCTGTGGAAGGCCAACTTAGAAGAACCAAAGCTACACCAGTCAGATCCTTCAGTGACTATTGCTGATCCCACTTCAAAAACACGTGTTAAACTTGCACCTGCAAGTGAGAATGACAGGCAACAACTTAAGTGGTTCTCTGATGCATGCAAAGGAATTCCACAGGAAGATCCAGCATTTTTGCAGAGTAACATTAGAACAGCTCCTCCCTCAGCGCCACCAGCTGCAGAAGATATAGAGATGGCTGCGGCTATCCGAACATCCATGCAGTCTGCCATGCATGAGAGGCCACCCCTTGCAAATGCCTTGCCAAACTTTGGAGCAAGTTCTTCAAGTGGAGTAAATACAAACAAGCATGGTTCAATTGGCACACAAAACCCAAAAACAAGTGGTAGTAGTTTGCCCACAAATGAAGGCGGACCCGTTAGCAATTCAAGTGAGCCCATTCATATCAATTATAATGAGCCTGTTTCTCAAAGCTCAAGTAGTTTGGATTTGATTCCATCAGCTCCTCCAATTGCGGATGAGAATCCAATAGATGGCCCCGTTCATTATCCATCAATTGATTCAAGCCCTGTTGAAATATCATCTCCTGCAGCAGAGGAGCCACCTGAAGAAGAAAAGAAAGCTGCTGGGAGTGTCTCATCTTGCGTAATCTGTTTAGATGCTCTGGCCGAGGGGGTATGCGTACCCTGTGGCCATGTTGCCGGATGCATGTCTTGCTTGAATGAGGTCAAAGCAAAGAAATGGGGTTGCCCGGTTTGTCGAGCAAAGATCGATCAGGTGATAAAGATATATCACGTTTAA 1392 0.4634 MGQAQSKSELLYQQVSYGNVEGMKALHREGAGLDWVDREGKTPLIVACMNPELYDVAKTLIELGANVNAYRPGRHAGTPLHHAAKRGIESIVTLLLLHGANALVINDDCQTALDVARAKGHGNVVRAIESHLCLFSGWLREFHGPGFLEVVAPQLVSKKVWVVVLPVGSRNLTRPYKLELAIYSITQDAQPRTVISLWKANLEEPKLHQSDPSVTIADPTSKTRVKLAPASENDRQQLKWFSDACKGIPQEDPAFLQSNIRTAPPSAPPAAEDIEMAAAIRTSMQSAMHERPPLANALPNFGASSSSGVNTNKHGSIGTQNPKTSGSSLPTNEGGPVSNSSEPIHINYNEPVSQSSSSLDLIPSAPPIADENPIDGPVHYPSIDSSPVEISSPAAEEPPEEEKKAAGSVSSCVICLDALAEGVCVPCGHVAGCMSCLNEVKAKKWGCPVCRAKIDQVIKIYHV 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0036 463 Gene3D - 79 132 IPR036770 -
Lele20g0036 463 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Lele20g0036 463 SUPERFAMILY RING/U-box 411 457 - -
Lele20g0036 463 SUPERFAMILY Ankyrin repeat 9 133 IPR036770 -
Lele20g0036 463 MobiDBLite consensus disorder prediction 293 402 - -
Lele20g0036 463 SMART ANK_2a 75 104 IPR002110 GO:0005515
Lele20g0036 463 SMART ANK_2a 39 69 IPR002110 GO:0005515
Lele20g0036 463 MobiDBLite consensus disorder prediction 299 362 - -
Lele20g0036 463 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Lele20g0036 463 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Lele20g0036 463 Gene3D - 2 78 IPR036770 -
Lele20g0036 463 ProSiteProfiles Zinc finger RING-type profile. 412 451 IPR001841 -
Lele20g0036 463 PANTHER ROLLING PEBBLES, ISOFORM B 402 460 - -
Lele20g0036 463 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Lele20g0036 463 Pfam Zinc finger, C3HC4 type (RING finger) 411 457 - -
Lele20g0036 463 SMART ring_2 412 450 IPR001841 -
Lele20g0036 463 Pfam Ankyrin repeat 78 101 IPR002110 GO:0005515
Lele20g0036 463 Pfam Ankyrin repeat 40 69 IPR002110 GO:0005515
Lele20g0036 463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 390 462 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0036 Lele-ChrLele20 1896872 1904146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0036 406 460 C3H Transcription Factor Family AT3G06140 32.727 5.38e-07 49.7