Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0013 ATGTATGTGAATCAGAAGCTCTCTGGGTTAAATGGCAGGATGCCACCAAGTTCCAAGTCAGGCAAGTCAAATGAAGCTTTGCATGAGTCCAATTCTTCACTCAGGAAATGCAAGAAGAAGAGGCCCTTTTTCGTGTGGGGTTTTCTTGGTGTTGTTGCAGTGGGAATTGTATGGTTCTTCATCAGTTCTCACTATAACTTGTTGATGTTGAGCAAGGAGAAGAGGTTGGATGATTGTGAGGAGAGAGCTCGAATCTTGCTACAACGCCACAATATCAGCAAAAAGCAACTTCATGCTTTCGTTTCCTTCTTCTCTGCATCAGATCAGTACCGTGCATCGCCCCAAAATGACACTCTTTTGGGAGATGCTAATTCAGACTTAGCTTCTTTACAGGGGTTGCTCTTCACGATTTTATCCCAATGTATCGATGAAAGAAGAATGCAAAAGCTGTTAAGCGGTGACCCTGGCAATACCTTGCAGTTGATATTTTCAGAGAACAAGGAGCATACATGTGTCCCTGGCCAAGTTGAACTTATGGAGCAATGCCCAGTTCTCAATGATTCTGTTCAGAGAACCCTGGAATCATTACTGCTAGTGCAAAAAACTGTGTCATTGGCCTCATACTCTGGCATCAGGTCCAATTTGGTCAATAATTTGTTTCATGGGAAGATTAAGCAGTTCTTTCTTGTTCATTTTGAAACAAATGCGTTTGCATTCTATAATATAACGAATATGCTTCTGGCTTTGCAGAACATTGTGCAGTCATGGGTACTAGAGTTAGTTGCAATTCAGGGTTATCTGACTTTGTCTATAGGATGCTGGTGGATTCTTGTTGTAATTACAATTTGTTGCAGATTGGCTGGCATTCCTTTACTTTGGAATCAGAAGCTGGTTTCACAGCCGAAAGAGTTGCAACATTCTGCTGGGCAAAATCCAAAGGGTGCTGGTATTTGGAGGATAAAGCTTTTAGTTACATTTGTGTTACTTGGAATAGTTGTGTCAATTTGGTTATTCTGGCACCTGAATAATGATATTATGCTGAGGAGAGAAGAAATGCTCACCACTATGTGTGATGAGCGGGCTCGCATGCTGCAGGATCAATTCAATGTGAGCATGAACCACGTTCATGCTCTGGCTATTCTTGTGTCCACCTTTCACCACAGTAAACATCCATCTGCTATTGACCAGAAAACTTTTAGAGAATATACAGAGAGAACAGCATTTGAAAGACCACTCACTAGTGGTGTTGCTTATGCTCTGAAAGTTCTCCACTCTGATAGGGAGCATTTTGAAAGGCAGCATGGGTGGACCATTAAGAAAATGGAAACTGAGAATGAAACACTTCTCCAAGATTGTATTCCCGAAAATCTCAATCCTGCACCCATTCAAGATGAATATGCACCAGTAATATTTGCTCAAGAAACTGTTCCCCATATCGTATCTATTGATATGATGTCTGGAAAGGAAGACCGTGAGAATATATTGCGAGCAAGAGCAACCAGAAATGGAGTGCTAACATCTCCTTTTAAACTACTGAAGTCCAATCACTTGGGGGTTGTCCTTACATTTGCTGTCTACAATGCTAATTTTCCTCCAAATGCTACACCAGAGCAATGCATTGAAGCTACTGTTGGGTTCAAGTACAAGCCTTTGCTACCTTGGACAGCAATCAATGCATCAGTTGGGTTACTTGTTATTACTTTGCTTCTTGGTCATATTTTTTATGCAGCAATCAGTCGAATAGCAAAAGTGGAGGATGACTACTTTGAAATGAGGGAGCTCATGGTTCGTGCCGAAGCTGCAGATGTAGCCAAATCTCAGGCTAAGATTGAGGCAGGAAAGCTTGAACTTGAAGCTGTAGAATTTGATCTCCTTTCTATTCTAGATGAAGTCCTATCTCTTTTCTCTGGAAAATCTAATGAAATAGGAATTGAGTTAGCTGTTTACGTATCCAAAATGGTGCCAGAAGTTGTTATTGGCGATCCTAAACAATTCCGGCAAATAATAACTAATCTTGTTGGAAATTCACTTAAGTTCACTCATGTTAAAGGACATGTTTTTGTATCGGTTCATTTGGCGAATGAAGTAAAGAGCCCACATCACATTATGGATGTAGTGCTGAGTCAAGGGTTCCGGGACATGTCAGACAGAACCTATAATACATTGAGTGGTTTTCCTGTTGTCAATAGATGGAAAAGCTGGGCAAATTTCAGAAAGTTAAGCAGTATGAATCTGATGGATGAGCCTGGAGTGATTCAATTACTAGTGACAGTCGAGGATACAGGTATAAGAATTCCTTTGGATGCACAAAACCGCATATTCACCCCTTTTATGCAAGCTGATAGTTCCACCTCACGAACATATGGTGGGACTGGAATAGGACTAAGCATTAGTAAATGTTTAGTTGACCTCATGGGAGGAGAAATTGGATTTGTAAGCGAACCTAGAACTGGCAGTACCTTTTCTTTTAGTGCAACTTTCAGGATACCAAAAGCCTCATCTCTGGATATAAAGCGGCAGCAGAGCAACCCTTTTGTTTCAGACTTTGAAGGATTGAGAGCACTTGTGGTGGATAGAAGAAAAATCCGTGCGGAAGTTACAAGATATTGTCTGCAGAGGATGGGGATGTCTGTGGATGTTACTTATAGTCTTAACTCAGCATACTCTTATCTATCTGGTTCTTCCAATAAGAGTATTACTAAACAGTTGGAAATGATTCTGATAGACAAGGATGTTTTGGATAAAGAAAGTAGTCTATTGTATGTCATCAAGAAACACAGGCAGAACGACATCAAAAGAGACCCAAAAAGTTTTCCCAAGATTTTTCTCTTGGCTAACAACCGCAGTCCTGATGAACGTGGTGAGCTAAAATCTGTTGGTGTTGTAGATGATATACTAATTAAACCTCTTTGGTTTAGCGCTTTGATTCGCTTCTACAGAGAAGCCCTTGGAAGTGAGAAGAAGCAAATAATTAGAAAGAAAGAACCAAACCTTGGGAACTTGCTAAGACAGAAACATATTTTGGTGGTTGACGATAATGCAGTGAACAGAAAAGTAGCAGAAGGTGTGCTACGAAGATATGGGGCAAAAGTAACCTGTGTGGAGGGCGGCAAGGCTACCTTAAAGATACTTAAGCCACCGCATAGTTTTGATGCCAGAAATGGACGGTTAAATGAAAAAATTGCACGTGGTGAAGCATCAAAAGAGATGTTTGGTAATATATCTCATCGGCACATGCCGATATTGGCTATGACAGCTGATGTAACTCAAGCTTCAATTGAAGACTGCAATAGGTGTGGGATGGATGACTACGTGTCAAAGCCATTCGAAGAAGAACAGCTCTATGAGGCAGTGGCACATTGCTTTGGGTCTGGTTGA 3378 0.4094 MYVNQKLSGLNGRMPPSSKSGKSNEALHESNSSLRKCKKKRPFFVWGFLGVVAVGIVWFFISSHYNLLMLSKEKRLDDCEERARILLQRHNISKKQLHAFVSFFSASDQYRASPQNDTLLGDANSDLASLQGLLFTILSQCIDERRMQKLLSGDPGNTLQLIFSENKEHTCVPGQVELMEQCPVLNDSVQRTLESLLLVQKTVSLASYSGIRSNLVNNLFHGKIKQFFLVHFETNAFAFYNITNMLLALQNIVQSWVLELVAIQGYLTLSIGCWWILVVITICCRLAGIPLLWNQKLVSQPKELQHSAGQNPKGAGIWRIKLLVTFVLLGIVVSIWLFWHLNNDIMLRREEMLTTMCDERARMLQDQFNVSMNHVHALAILVSTFHHSKHPSAIDQKTFREYTERTAFERPLTSGVAYALKVLHSDREHFERQHGWTIKKMETENETLLQDCIPENLNPAPIQDEYAPVIFAQETVPHIVSIDMMSGKEDRENILRARATRNGVLTSPFKLLKSNHLGVVLTFAVYNANFPPNATPEQCIEATVGFKYKPLLPWTAINASVGLLVITLLLGHIFYAAISRIAKVEDDYFEMRELMVRAEAADVAKSQAKIEAGKLELEAVEFDLLSILDEVLSLFSGKSNEIGIELAVYVSKMVPEVVIGDPKQFRQIITNLVGNSLKFTHVKGHVFVSVHLANEVKSPHHIMDVVLSQGFRDMSDRTYNTLSGFPVVNRWKSWANFRKLSSMNLMDEPGVIQLLVTVEDTGIRIPLDAQNRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPRTGSTFSFSATFRIPKASSLDIKRQQSNPFVSDFEGLRALVVDRRKIRAEVTRYCLQRMGMSVDVTYSLNSAYSYLSGSSNKSITKQLEMILIDKDVLDKESSLLYVIKKHRQNDIKRDPKSFPKIFLLANNRSPDERGELKSVGVVDDILIKPLWFSALIRFYREALGSEKKQIIRKKEPNLGNLLRQKHILVVDDNAVNRKVAEGVLRRYGAKVTCVEGGKATLKILKPPHSFDARNGRLNEKIARGEASKEMFGNISHRHMPILAMTADVTQASIEDCNRCGMDDYVSKPFEEEQLYEAVAHCFGSG 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0013 1125 Gene3D CHASE domain 394 578 IPR042240 -
Lele20g0013 1125 MobiDBLite consensus disorder prediction 1 30 - -
Lele20g0013 1125 SMART HKATPase_4 660 829 IPR003594 -
Lele20g0013 1125 Pfam CHASE domain 393 551 IPR006189 -
Lele20g0013 1125 SUPERFAMILY CheY-like 1003 1121 IPR011006 -
Lele20g0013 1125 ProSiteProfiles Response regulatory domain profile. 1006 1122 IPR001789 GO:0000160
Lele20g0013 1125 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 608 824 IPR036890 -
Lele20g0013 1125 ProSiteProfiles Histidine kinase domain profile. 608 829 IPR005467 -
Lele20g0013 1125 PANTHER TWO-COMPONENT HISTIDINE KINASE 299 537 - -
Lele20g0013 1125 Gene3D - 1000 1054 - -
Lele20g0013 1125 ProSiteProfiles CHASE domain profile. 390 546 IPR006189 -
Lele20g0013 1125 FunFam Histidine kinase 4 394 561 - -
Lele20g0013 1125 ProSiteProfiles Response regulatory domain profile. 853 983 IPR001789 GO:0000160
Lele20g0013 1125 Gene3D - 1063 1124 - -
Lele20g0013 1125 Gene3D - 341 393 - -
Lele20g0013 1125 Gene3D - 69 114 - -
Lele20g0013 1125 Coils Coil 69 89 - -
Lele20g0013 1125 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 660 825 IPR003594 -
Lele20g0013 1125 SUPERFAMILY CheY-like 848 984 IPR011006 -
Lele20g0013 1125 Gene3D - 612 832 IPR036890 -
Lele20g0013 1125 CDD HATPase_EvgS-ArcB-TorS-like 665 830 - -
Lele20g0013 1125 PRINTS Bacterial sensor protein C-terminal signature 789 807 IPR004358 GO:0016310|GO:0016772
Lele20g0013 1125 PRINTS Bacterial sensor protein C-terminal signature 754 768 IPR004358 GO:0016310|GO:0016772
Lele20g0013 1125 PRINTS Bacterial sensor protein C-terminal signature 772 782 IPR004358 GO:0016310|GO:0016772
Lele20g0013 1125 PRINTS Bacterial sensor protein C-terminal signature 813 826 IPR004358 GO:0016310|GO:0016772
Lele20g0013 1125 SMART REC_2 1005 1118 IPR001789 GO:0000160
Lele20g0013 1125 CDD REC_hyHK_CKI1_RcsC-like 1007 1118 - -
Lele20g0013 1125 Gene3D - 845 989 - -
Lele20g0013 1125 SMART CHASE_2 390 577 IPR006189 -
Lele20g0013 1125 MobiDBLite consensus disorder prediction 1 31 - -
Lele20g0013 1125 Pfam Response regulator receiver domain 1007 1118 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0013 Lele-ChrLele20 914395 923540 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0013 301 546 Miscellaneous Gene Families AT5G35750 71.138 1.59e-116 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele20g0013 HATPase_c 4.3e-29 CL0025