Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0010 ATGTATGTGAATCGGAAGCTCTCTGGGTTAAATGGCAGGATGCCACCAAGTTCCAAGTCAGGCAAGTCAAATGAAGCTTTGCATGAGTCCAATTCTTCACTCAGGAAATGCAAGAAGAAGAGGCCCTTTTTCGTGTGGGGTTTTCTTGGTGTTGTTGCAGTGGGAATTGTATGGTTCTTCATCAGTTCTCACTGTAACTTGTTGATGTTGAGCAAGGAGAAGAGGTTGGATGATTGTGAGGAGAGAGCTCGAATCTTGCTACAACGCCACAATATCAGCAAAAAGCAACTTCATGCTTTCGTTTCCTTCTTCTCTGCATCAGATCAGTACCGTGCATCGCCCCAAAATGACACTCTTTTGGGAGATGCTGATTCAGACTTAGCTTCTTTACAGGGGTTGCTCTTCACGTCTATGATGCAGATTTTATCCCAATGTATCAATAAAAGAAGAATGCAAAAGCTGTTAAGTGGTGACCCTGGCAATACCTTGCAGTTGATATTTTCAGAGAACAAGGAGCATACATGTGTCCCTGGCCAAGTCGAACTTATGGAGCAATGCCCAGTTCTCAATGATTCTGTTCAGAGAACCCTGGAATCATTACTGCTAGTGCAAAAAACTGTGTCATTAGCCTCATACTCTGCCATCAGGTCCAATTTCGTCAATAATTTGTTTCATGGGAAGATTAAGCAGTTCTTTCTTGTTCATTTTGAAACAAATGCGTTTGCATTCTATAATATAACGAATATGCTTCTGGCTTTGCAGAACATTGTGCAGTCATGGGTACTAGAGTTAGTTGCAATTCAGGGTTATCTGACTTTGTCTATAGGATGCTGGTGGATTCTTGTTGTAATTACAATTTGTTGCAGATTGGCTGGCATTCCTTTACTTTGGAATCAGAAGCTGGTTTCACAGCCGAAAGAGTTGCAACATTCTGCTGGGCAAAATCCAAAGGGTGCTGGTATTTGGAGGATAAAGCTTTTAGTTACATTTGTGTTACTTGAAATAGTTGTGTCAATTTGGTTATTCTGGCACCTGAATAATGATATTATGCTGAGGAGAGAAGAAATGCTCACCACTATGTGTGATGAGCGGGCTCGCATGCTGCAGGATCAATTCAATGTGAGCATGAACCACGTTCATGCTCTGGCTATTCTTGTGTCCACCTTTCACCACAGTAAACATCCATCTGCTATTGACCAGAAAACTTTTGGAGAATATACAGAGAGAACAGCATTTGAAAGACCACTCACTAGTGGTGTTTCTTATGCTCTAAAAGTTCTCCACTCTGATAGGGAGCATTTTGAAAGGCAGCATGGGTGGACCATTAAGAAAATGGAAACTGAGAATGAAACACTTCTCCAAGATTGTTTTCCCGAAAATCTCAATCCTGCACCCATTCAAGATGAATATGCACCAGTAATATTTGCTCAAGAAACTATTTCCCATATCGTATCTATTGATATGATGTCTGGAAAGGAAGACCGTGAGAATATATTGCGAGCAAGAGCAACCAGAAATGGAGTGCTAACATCTCCTTTTAAACTACTGAAGTCCAATCACTTGGGGGTTGTCCTTACATTTGCTGTCTACAATGCTAATTTTCCTCCAAATGCTACACCAGAGCAACGCATTGAAGCTACTGTTGGGTACTTGGGTGCTTCCTATGATGTTCCATCACTGGTGGATAAGCTCCTCCACCAACTTGCCAGCAAGCAAACCATTGTTGTAAATGTTTATGATACAACTAATGCTTCTGCACCTATCAATATGTATGGTACTGATGTTGTTGATACTAGGTTACTACATATAAGCAACCTGGATTTTGGTGATCCTACACGAAAACATGAGATGCATTGCAGGTTCAAGTACAAGCCTTCGCTACCTTGGACAGCAATCAATGCATCAGTTGGGTTACTTGTTATTACTTTGCTTCTTGGTCATATTTTTTATGCAGCAATCAGTCGAATAGCAAAAGTGGAGGATGACTACTTTGAAATGAGGGAGCTCATGGTTCGTGCTAAAGCTGCAGATTTTCTGGCAACAGTTTCACATGAGATTAGGACTCCAATGAATGGTGTTTTAGGTATGCTGCAAATGTTGATGGATACTGAACTAGATGAAAGCCAGATGGACTGTGCTCAGACTACTCACAAGAGTGGTAAAGATCTTATATCAGTGATAAATGAGGTTCTTGACCAGGCTAAGATTGAGGCAGGAAAGCTTGAACTTGAAGTGATAAATGAGGTTCTTGACCAGGCTAAGATTGAGGCAGGAAAGCTTGAACTTGAAGCTGTAGAATTTGATCTCCTTTCTATTCTAGATGAAGTCCTATCTCTTTTCTTTGGAAAATCTAATGAAATAGGAATTGAGTTCACTCATGTTAAAGGACATGTTTTTGTATCGGTTCATTTGGCGAATGAAGTAAAGAGCCCACATCACATTATGGATGTAGTGCTAAGTCAAGGGTTCCGGGACATGTCAGACAGAACCTATAATACATTGAGTGGTTTTCCTGTTGTCAATAGATGGAAAAGCTGGGCAAATTTCAGAAAGTTAAGCAGTATGAATCTGATGGATGAGCCTAGAGTGATTCAATTACTAGTGACAGTCGAGGATACAGGTATAGGAATTCCTTTGGATGCACAAAACCGCATATTCACCCCTTTTATGCAAGCTGATAGTTCCACCTCACGAACATATGGTGGGACTGGAATAGGACTAAGCATTAGTAAATGTTTAGTTGACCTCATGGGAGGAGAAATTGGATTTGTAAGCGAACCTGGAACTGGCAGTACCTTTTCTTTTAGTGCAACTTTCGGGATACCAAAAGCCTCATCTCTGGATACAAAGCGGCAGCAGAGCAACCCTTTTGTTTCAGACTTTGAAGGATTGAGAGCACTTGTGGTGGATAGAAGAAAAATCCGTGCGGAAGTTACAAGATATTGTCTGCAGAGGATGGGGATGTCTGTGGATGTTACTTATAGTCTTAACTCAGCATACTCTTATCTATCTGGTTCTTCCAACAAGAGTATTACTAAACAGTTGGAAATGATTCTGATAGACAAGGATGTTTTGGATAAAGAAAGTAGTCTATTGTATGTCATCAAGAAACACAGGCAAAACGACATCAAAAGAGACCCAAAAAGTTTTCCCAAGATTTTTCTCTTGGCTAACAACCGCAGTCCTGATGAACGTGGTGAGCTAAAATCTGTTGGTGTTGTAGATGATATACTAATTAAACCTCTTTGGTTTAGCGCTTTGATTCGCTTCTATAGAGAAGCCCTTGGAAGTGAGAAGAAGCAAATAATTAGAAAGAAAGAACCAAACCTTGGGAACTTGCTAAGACAGAAACATATTTTGGTGGTTGACGATAATGCAGTGAACAGAAAAGTAGCAGAAGGTGTGCTACGAAGATATGGGGCAAAAGTAACCTGTGTGGAGGGCGGCAAGGCTGCCTTAAAGATACTTAAGCCACTGCATAGTTTTGATGCTTGTTTCATGGATCTCCAAATGCCAGAAATGGACGGATTTGAAGTGACCAGACAAATCCGCTGTCTGGAGAAAGAGTTAAATGAAAAAATTGCACGTGGTGAAGCATCAAAAGAGATGTTTGGTAATGTATCTCATCGGCACATGCCGATATTGGCTATGACAGCTGATGTAACTCAAGCTTCAATTGAAGACTGCAATAGGTGTGGGATGGATGACTACGTGTCAAAGCCATTCGAAGAAGAACAGCTCTATGAGGCAGTGGCGCATTGCTTTGGATCTGGTTGA 3777 0.4096 MYVNRKLSGLNGRMPPSSKSGKSNEALHESNSSLRKCKKKRPFFVWGFLGVVAVGIVWFFISSHCNLLMLSKEKRLDDCEERARILLQRHNISKKQLHAFVSFFSASDQYRASPQNDTLLGDADSDLASLQGLLFTSMMQILSQCINKRRMQKLLSGDPGNTLQLIFSENKEHTCVPGQVELMEQCPVLNDSVQRTLESLLLVQKTVSLASYSAIRSNFVNNLFHGKIKQFFLVHFETNAFAFYNITNMLLALQNIVQSWVLELVAIQGYLTLSIGCWWILVVITICCRLAGIPLLWNQKLVSQPKELQHSAGQNPKGAGIWRIKLLVTFVLLEIVVSIWLFWHLNNDIMLRREEMLTTMCDERARMLQDQFNVSMNHVHALAILVSTFHHSKHPSAIDQKTFGEYTERTAFERPLTSGVSYALKVLHSDREHFERQHGWTIKKMETENETLLQDCFPENLNPAPIQDEYAPVIFAQETISHIVSIDMMSGKEDRENILRARATRNGVLTSPFKLLKSNHLGVVLTFAVYNANFPPNATPEQRIEATVGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDTTNASAPINMYGTDVVDTRLLHISNLDFGDPTRKHEMHCRFKYKPSLPWTAINASVGLLVITLLLGHIFYAAISRIAKVEDDYFEMRELMVRAKAADFLATVSHEIRTPMNGVLGMLQMLMDTELDESQMDCAQTTHKSGKDLISVINEVLDQAKIEAGKLELEVINEVLDQAKIEAGKLELEAVEFDLLSILDEVLSLFFGKSNEIGIEFTHVKGHVFVSVHLANEVKSPHHIMDVVLSQGFRDMSDRTYNTLSGFPVVNRWKSWANFRKLSSMNLMDEPRVIQLLVTVEDTGIGIPLDAQNRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPGTGSTFSFSATFGIPKASSLDTKRQQSNPFVSDFEGLRALVVDRRKIRAEVTRYCLQRMGMSVDVTYSLNSAYSYLSGSSNKSITKQLEMILIDKDVLDKESSLLYVIKKHRQNDIKRDPKSFPKIFLLANNRSPDERGELKSVGVVDDILIKPLWFSALIRFYREALGSEKKQIIRKKEPNLGNLLRQKHILVVDDNAVNRKVAEGVLRRYGAKVTCVEGGKAALKILKPLHSFDACFMDLQMPEMDGFEVTRQIRCLEKELNEKIARGEASKEMFGNVSHRHMPILAMTADVTQASIEDCNRCGMDDYVSKPFEEEQLYEAVAHCFGSG 1258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0010 1258 ProSiteProfiles Response regulatory domain profile. 965 1095 IPR001789 GO:0000160
Lele20g0010 1258 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 864 937 IPR003594 -
Lele20g0010 1258 Pfam Response regulator receiver domain 1119 1251 IPR001789 GO:0000160
Lele20g0010 1258 SMART HisKA_10 674 739 IPR003661 GO:0000155|GO:0007165
Lele20g0010 1258 ProSiteProfiles Histidine kinase domain profile. 681 941 IPR005467 -
Lele20g0010 1258 CDD HisKA 677 735 IPR003661 GO:0000155|GO:0007165
Lele20g0010 1258 CDD HATPase_EvgS-ArcB-TorS-like 859 939 - -
Lele20g0010 1258 Gene3D - 757 942 IPR036890 -
Lele20g0010 1258 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 747 936 IPR036890 -
Lele20g0010 1258 ProSiteProfiles Response regulatory domain profile. 1118 1255 IPR001789 GO:0000160
Lele20g0010 1258 Coils Coil 69 89 - -
Lele20g0010 1258 MobiDBLite consensus disorder prediction 11 30 - -
Lele20g0010 1258 Gene3D CHASE domain 398 625 IPR042240 -
Lele20g0010 1258 Gene3D - 655 737 - -
Lele20g0010 1258 PRINTS Bacterial sensor protein C-terminal signature 866 880 IPR004358 GO:0016310|GO:0016772
Lele20g0010 1258 PRINTS Bacterial sensor protein C-terminal signature 884 894 IPR004358 GO:0016310|GO:0016772
Lele20g0010 1258 PRINTS Bacterial sensor protein C-terminal signature 925 938 IPR004358 GO:0016310|GO:0016772
Lele20g0010 1258 PRINTS Bacterial sensor protein C-terminal signature 901 919 IPR004358 GO:0016310|GO:0016772
Lele20g0010 1258 SUPERFAMILY CheY-like 960 1096 IPR011006 -
Lele20g0010 1258 Pfam His Kinase A (phospho-acceptor) domain 677 739 IPR003661 GO:0000155|GO:0007165
Lele20g0010 1258 PANTHER TWO-COMPONENT HISTIDINE KINASE 744 792 - -
Lele20g0010 1258 Coils Coil 743 763 - -
Lele20g0010 1258 Pfam CHASE domain 397 591 IPR006189 -
Lele20g0010 1258 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 676 740 IPR036097 GO:0000155|GO:0007165
Lele20g0010 1258 Gene3D - 1112 1257 - -
Lele20g0010 1258 Gene3D - 957 1101 - -
Lele20g0010 1258 FunFam Histidine kinase 4 398 625 - -
Lele20g0010 1258 Gene3D - 345 397 - -
Lele20g0010 1258 Gene3D - 69 114 - -
Lele20g0010 1258 SUPERFAMILY CheY-like 1116 1255 IPR011006 -
Lele20g0010 1258 ProSiteProfiles CHASE domain profile. 394 618 IPR006189 -
Lele20g0010 1258 SMART CHASE_2 394 593 IPR006189 -
Lele20g0010 1258 SMART HKATPase_4 764 941 IPR003594 -
Lele20g0010 1258 CDD REC_hyHK_CKI1_RcsC-like 1119 1251 - -
Lele20g0010 1258 SMART REC_2 1117 1251 IPR001789 GO:0000160
Lele20g0010 1258 MobiDBLite consensus disorder prediction 1 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0010 Lele-ChrLele20 830258 839484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0010 268 1255 Miscellaneous Gene Families AT5G35750 58.654 0.0 1177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele20g0010 CHASE 1.1e-33 CL0165