Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele2000278g0012 ATGAAAGGAATATCTTATCGCGGTAATCATATTTCTTTCGGTAGATATGCTCTTCAAGCACTTGAACCTGCTTGGATCACATCTAGACAAATCGAAGCAGGGCGCCGAGCAATGACACGAAATATACGCCGTGGTGGAAAAATATGGGTACGTATATTTCCAGACAAACCAGTTACAGTAAGACCAACAGAAACCCGTATGGGTTCGGGGAAAGGATCCCCCGAATATTGGGTAGCTGTCGTTAAACCGGGTAGAATACTTTATGAAATGGCAGACAATAGCGGGGCCCGAGAATTGATGTGTATTCGAATCATAGGAGCTAGTAATCGTCGATATGCACATATTGGTGACGTTATTGTTGCTGTGATCAAGGAAGCGGTACCAAATACACCTCTAGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGCGACAACGGAATGATAATACGATATGATGACAATGCTGCAGTTGTCATTGATCAAGAAGGAAATCCAAAAGGAACTCGAGTTTTTGGCGCGATCGCCCGAGAATTGAGACAGTTAAATTTTACTAAAATAGTTTCACTAGCTCCTGAGGTATTATAA 609 0.4171 MKGISYRGNHISFGRYALQALEPAWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele2000278g0012 202 ProSitePatterns Ribosomal protein L16 signature 2. 66 77 IPR020798 GO:0003735|GO:0005840|GO:0006412
Lele2000278g0012 202 SUPERFAMILY Ribosomal protein L16p/L10e 1 92 IPR036920 GO:0003735|GO:0005840|GO:0006412
Lele2000278g0012 202 PANTHER 50S/60S RIBOSOMAL PROTEIN L16 1 146 IPR000114 GO:0003735|GO:0006412|GO:0019843
Lele2000278g0012 202 ProSitePatterns Ribosomal protein L16 signature 1. 43 54 IPR020798 GO:0003735|GO:0005840|GO:0006412
Lele2000278g0012 202 TIGRFAM rplN_bact: ribosomal protein uL14 89 202 IPR005745 GO:0003735|GO:0006412|GO:0015934
Lele2000278g0012 202 FunFam 50S ribosomal protein L14, chloroplastic 80 202 - -
Lele2000278g0012 202 Hamap 50S ribosomal protein L14 [rplN]. 80 202 IPR000218 GO:0003735|GO:0005840|GO:0006412
Lele2000278g0012 202 Pfam Ribosomal protein L16p/L10e 2 98 IPR016180 GO:0003735|GO:0005840|GO:0006412
Lele2000278g0012 202 Gene3D Ribosomal protein L14 74 202 IPR036853 GO:0003735|GO:0005840|GO:0006412
Lele2000278g0012 202 Pfam Ribosomal protein L14p/L23e 89 202 IPR000218 GO:0003735|GO:0005840|GO:0006412
Lele2000278g0012 202 CDD Ribosomal_L16_L10e 7 90 IPR016180 GO:0003735|GO:0005840|GO:0006412
Lele2000278g0012 202 SMART Ribosomal_L14_2 86 202 IPR000218 GO:0003735|GO:0005840|GO:0006412
Lele2000278g0012 202 ProSitePatterns Ribosomal protein L14 signature. 140 166 IPR019972 -
Lele2000278g0012 202 PRINTS Ribosomal protein L16 signature 42 71 IPR000114 GO:0003735|GO:0006412|GO:0019843
Lele2000278g0012 202 PRINTS Ribosomal protein L16 signature 8 20 IPR000114 GO:0003735|GO:0006412|GO:0019843
Lele2000278g0012 202 PRINTS Ribosomal protein L16 signature 26 37 IPR000114 GO:0003735|GO:0006412|GO:0019843
Lele2000278g0012 202 PRINTS Ribosomal protein L16 signature 72 101 IPR000114 GO:0003735|GO:0006412|GO:0019843
Lele2000278g0012 202 SUPERFAMILY Ribosomal protein L14 90 202 IPR036853 GO:0003735|GO:0005840|GO:0006412
Lele2000278g0012 202 TIGRFAM rplP_bact: ribosomal protein uL16 1 92 IPR000114 GO:0003735|GO:0006412|GO:0019843
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele2000278g0012 91 202 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 33.621 6.94e-14 64.3