Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele2000262g0003 ATGGTAGGATTGGAACTCATACCAATTGGTACGATTCTGGCTGTGCTTACCAATCAGATTTTGAAAACAGCTAATGCGGCAGCTGAAGTTCTTGTCGAAAAAGAAAGTTTTAAGGTTCTTTCACGACACTTGTATGATATTGAGCCGGTGCTAAAGGAATTACAGCTTCAGGAACTGAATGAGTCTCAAGCTGCAAGAATTGCTCTGGAGTCTCTTGAAGAAGACGTGAAGAGGGCAAATAAAGTGGTTGAGAAGTACAGGAACCGTGGTCGTTTTTACCTGCTGCTTAATTGCAGGCACATAGTTCATGAAGTTGAAGAAGTCACAAGAAGCATTGGGAAGTCCCTGGCTGTACTATCACTTGGAAATACTGAAGTCTTATCGCGAATTTCAGATCAGGTTGATAGATTACAAAATGAGATGCAAAGGGTGGAGTTCCAGGCTTCACATTCTCAGCTTCAAATAGTGGAGAGGTTGGATCAGGGCCTTAGGGAGCAGAAATTAGATCAGGCTTTTGCGAATGACATGCTTGAAGAAATTGCCAGGGTGGTTGGCGTGCCGGTAGAGCCCTCAGAGATAAGCAAAGAGCTGGCCAGCATTAGGAAAGAAAAAGAAGAAGCTGCTGACAGAAAAGAAAGAGCCGAGGTTTTCTTCTTGGAGCAGGTCATCGAGTTACTATCCCGAGCTGATGCTGCAAGAGATTATGAAGAAGTTAAGAAACAATACTATGAAAGACTTCAGGTGATAGAAAGATACAATTCAAGGGAAAAATATATAGAGCCGCTTAATTCTTTCCTTTGTTGTATAACCGGGACCGTTATGGTAGATCCTGTAAGCCTTTGCACTGGGACTACTTGTGAGAGATACGCCATTGAGTCTTGGTTTGACCGTGGCATGAGGACCGACCCGGAAACTAAAGAAGTACTCGAAGATACTAAGTTGAGATCTAATGTTCCACTTAGACAATCCATAGAGGAATGGAGAGAACTTAATTACTGCCTTACAATCAGGTCTATCAGGGAAAACCTTTTATCAAATTCTAACTTATCTGTGGTAGAAACCTTGAGACAAGTGCAGGATCTCATAAGAGACAATTCTATAAACAAGGATTGGATTTCTATAGGAAGGCTTACCGACATTATTATCTCTATCCTTGGGAACACTGATAACGGAGAAGTGAAGATCAACATTCTGAGTACTTTGAACGATGCAGTAGAAGGTCACATGAGAAACAAGGAAAAAGTATCAGAATCTCAAGGATGGGATCACATTATTTGCTGCTTGGGCAGCGACTCTAGAATTTCAAAAGCTGCAATTAACTTGCTGTATGAGTTACTGCAAGATCGAACTGGTTGGAATGTGTCTCTCTGCAGAAGACTCTCTCAGCATTACGGTGCAATTTCTTCCCTTGTTACCCTTCGAAAGGGTCCAGAAGAGGAGTCAGCTGAGATTGCAGAAAAGATTTTGATGGAGCTTTTTGACATCGATGAGGTTAACATTTGTAGTGCTGCCAAGTTTGGCTGGTATAAACCGCTTGTCGATCATATGGTTCAAGGAGTAGAATCTTCAAGAATATCAATGGCGAAAACCATTGTGAATATGGAGCTGAGTGATTCAAATTTGAACCTCCTTGGTGAAGAAGGAGTTATACCTCCTTTGCTTGAAATGCTGTCTGGCAACAGTGAATTAAAAGAAGTCTCGTTATCTGCACTGGTTAAACTATCGGGTTCTCGTGCCAATAAAATGATTATAGCTGCATTGGGTGGAGTTCCTATTATTCTAGAACAAATGTTCTCTCCTTCTATGCGAACTCTCATTACCATCAAATGCTCTGAAATCCTGGAGAAGCTTTCTGCTGATGATGATGGAATTGATTTCTTTGTTGACAGAGAAGGAAAACAACTGGAGTTAGATTCCATTATCTCCAAATTACTTGCTCTTCAGCAGAGTCCCAACTTGGCCCACAATACCCGCAAGCCTTCTTTGCGTGCACTTCTCGGAATTTGCAAGTTTGAGACCGGTTTAGTCAAGAAGGCTGTCCTGGCTGCCAGTGGTGTATCTCTAATCCTTCCCCTTCTTGATGACTCTGATTCGGAAATCAGAGAGACCGCCATAAACCTTCTCTTTCTTTTCTCCCAACATGAACCAGAGGGAGTGGTTGAATACCTCTTCAGGCCAAGGAGGCTCGAGGCTTTGGTGGGATTTTTAGAGACTGATGACAACGATGTTCAGATGGCTGCTGCTGGTTTGCTAGCGAACCTACCGAAATCCGAGAAAGAGCTCACCATGAAGCTGATTGCATTGGGTGGACTTGATGCAATCATATGCATTTTGAAAACTGGAACAATGGAAGCAAAAGAAAATGCTCTCAGTGCACTCTTCAGGTTTACAGATCCCACAAACATCGAGTCACAGCGCGATTTGGTTAAGCGTGGAATATATCCTTTGCTCGTGAATTTTCTCAAAACTGGTTCGATAACAGCAAAGGCTAGAGCAGCAGCATTCATTGGAGATCTTTCTACGAGCACGCCAATGCTCACACTCGCAGCCAAATCAACAGGCTGCTGCTGGTGTTTTAGATCATCAAGAGTTCCTTTATGCCCAGCACATGGTACTGTATGCAGTGTGAGCAGCACATTTTGTCTCCTGGAAGCACAAGCGTTGCCTGGTTTGGTAAATCTCTTACGTGGCGAGGTCGATGTAACAGCTTATGAATCAATACAGACGCTTTCAACATTGGTTTTGGAAGATTATCCTCAAAGGGGTGCTCGTGTTTTGCACGAATCGAATGCTATAAAACCGCTTCTGGATATTCTGACTTGGGGGTCTGATTCTCTCAAGGCTGAGGCTCTAGGACTCTTGGAGAAGGTCTTTGTATCAAAGGAAATGGTGGAATTCCACGGCGCAACAGCTAGAACGCGGCTGGTCAGTTTAACAGGGAAGAATATATATGGAGAAGGCCATCTCAGAAGAAAAGCTGCTAAGGTATTGTCATTGATCGAACGGTATTCGAGATCATCATCTGCTGCTGTTTCAGGAGTTCTTGAGTGA 3051 0.431 MVGLELIPIGTILAVLTNQILKTANAAAEVLVEKESFKVLSRHLYDIEPVLKELQLQELNESQAARIALESLEEDVKRANKVVEKYRNRGRFYLLLNCRHIVHEVEEVTRSIGKSLAVLSLGNTEVLSRISDQVDRLQNEMQRVEFQASHSQLQIVERLDQGLREQKLDQAFANDMLEEIARVVGVPVEPSEISKELASIRKEKEEAADRKERAEVFFLEQVIELLSRADAARDYEEVKKQYYERLQVIERYNSREKYIEPLNSFLCCITGTVMVDPVSLCTGTTCERYAIESWFDRGMRTDPETKEVLEDTKLRSNVPLRQSIEEWRELNYCLTIRSIRENLLSNSNLSVVETLRQVQDLIRDNSINKDWISIGRLTDIIISILGNTDNGEVKINILSTLNDAVEGHMRNKEKVSESQGWDHIICCLGSDSRISKAAINLLYELLQDRTGWNVSLCRRLSQHYGAISSLVTLRKGPEEESAEIAEKILMELFDIDEVNICSAAKFGWYKPLVDHMVQGVESSRISMAKTIVNMELSDSNLNLLGEEGVIPPLLEMLSGNSELKEVSLSALVKLSGSRANKMIIAALGGVPIILEQMFSPSMRTLITIKCSEILEKLSADDDGIDFFVDREGKQLELDSIISKLLALQQSPNLAHNTRKPSLRALLGICKFETGLVKKAVLAASGVSLILPLLDDSDSEIRETAINLLFLFSQHEPEGVVEYLFRPRRLEALVGFLETDDNDVQMAAAGLLANLPKSEKELTMKLIALGGLDAIICILKTGTMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVNFLKTGSITAKARAAAFIGDLSTSTPMLTLAAKSTGCCWCFRSSRVPLCPAHGTVCSVSSTFCLLEAQALPGLVNLLRGEVDVTAYESIQTLSTLVLEDYPQRGARVLHESNAIKPLLDILTWGSDSLKAEALGLLEKVFVSKEMVEFHGATARTRLVSLTGKNIYGEGHLRRKAAKVLSLIERYSRSSSAAVSGVLE 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele2000262g0003 1016 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1008 - -
Lele2000262g0003 1016 Gene3D - 872 999 IPR011989 -
Lele2000262g0003 1016 SUPERFAMILY ARM repeat 196 841 IPR016024 -
Lele2000262g0003 1016 SUPERFAMILY RING/U-box 248 330 - -
Lele2000262g0003 1016 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Lele2000262g0003 1016 Gene3D - 332 499 IPR011989 -
Lele2000262g0003 1016 Coils Coil 62 89 - -
Lele2000262g0003 1016 SUPERFAMILY ARM repeat 877 1000 IPR016024 -
Lele2000262g0003 1016 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Lele2000262g0003 1016 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Lele2000262g0003 1016 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 727 754 IPR000225 GO:0005515
Lele2000262g0003 1016 SMART arm_5 577 619 IPR000225 GO:0005515
Lele2000262g0003 1016 SMART arm_5 715 756 IPR000225 GO:0005515
Lele2000262g0003 1016 SMART arm_5 758 798 IPR000225 GO:0005515
Lele2000262g0003 1016 SMART arm_5 408 447 IPR000225 GO:0005515
Lele2000262g0003 1016 SMART arm_5 537 576 IPR000225 GO:0005515
Lele2000262g0003 1016 SMART arm_5 801 841 IPR000225 GO:0005515
Lele2000262g0003 1016 SMART arm_5 875 915 IPR000225 GO:0005515
Lele2000262g0003 1016 SMART arm_5 919 959 IPR000225 GO:0005515
Lele2000262g0003 1016 SMART arm_5 673 713 IPR000225 GO:0005515
Lele2000262g0003 1016 Coils Coil 127 154 - -
Lele2000262g0003 1016 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 331 IPR013083 -
Lele2000262g0003 1016 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 548 589 IPR000225 GO:0005515
Lele2000262g0003 1016 Gene3D - 507 855 IPR011989 -
Lele2000262g0003 1016 Gene3D - 8 122 IPR036537 GO:0007166
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele2000262g0003 264 971 U-box Gene Family AT1G76390 26.720 2.81e-39 155