Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele2000258g0003 ATGGAGTTCTGGGGTGTCGAGGTTAAGGCTGGGGAGTCTGTTAAAGTTGATCCTCAAGAGTTTGATGCCTACATTCATCTTTCTCAGGCTGCCCTTGGTGAGACAAAGAAAGATAAGGGAGCTGAACATGTGGTCCTTTACTTAAAATTTGATGACCAAAAGTTTGTTTTGGGAACCCTTTCAAAGGATAACTTCCCCCAGATATCGTTTGACTTAGTTTTGGAAAAGGAGTTTGAGCTCTCCCACAATTCAAAAAATGGCAGCGTCTTTTACTGAAAAGCTGATGCTAAGACTGCCCTAGCTAAGATTGCAGCATCCAAAAAAAGTGATGCCCGTGCTAATGATTCCAAAAAGCAAGGCAAGGTTGATCCAAAGAATGAGGATGACGATTCTGAAGATGAATCTGATGATGAAGATGATGAAGACGGAGATTCTGATGAGGATATGCTGGATGGTGAAAGTGATAGTAATGACGAGAGTGATGATGATGAAGATGATGAGGAGACTCCCAAGAAGCCGGATCTGAGTAAGAAGAGACCCAATGATTCTGCATTAAAAACTCCAGTTTCTGCCAAGAAAGCTAAAACTGGTACTCCTGAAAAGAAAGATGCTAAGAAAGGTGGTTATACCGCAACTCCTCACCCAATGAAGAAGGGTGGAAAGACTCCTAACGGTGATGCCAAGGAGCCTAAGTCTGGTGGACACTTGTCCTGCAAATCTTGCAGCAAGACTTTCAACTCTGAAAGTGGTCTTCAACAACATAAAAAGGCAAAGCACAGTGGTCAGTGA 789 0.4284 MEFWGVEVKAGESVKVDPQEFDAYIHLSQAALGETKKDKGAEHVVLYLKFDDQKFVLGTLSKDNFPQISFDLVLEKEFELSHNSKNGSVFYXKADAKTALAKIAASKKSDARANDSKKQGKVDPKNEDDDSEDESDDEDDEDGDSDEDMLDGESDSNDESDDDEDDEETPKKPDLSKKRPNDSALKTPVSAKKAKTGTPEKKDAKKGGYTATPHPMKKGGKTPNGDAKEPKSGGHLSCKSCSKTFNSESGLQQHKKAKHSGQ 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele2000258g0003 262 FunFam Histone deacetylase HDT1 1 99 - -
Lele2000258g0003 262 ProSitePatterns Zinc finger C2H2 type domain signature. 238 259 IPR013087 -
Lele2000258g0003 262 Gene3D Nucleoplasmin core domain 1 92 - -
Lele2000258g0003 262 MobiDBLite consensus disorder prediction 237 251 - -
Lele2000258g0003 262 ProSiteProfiles Zinc finger C2H2 type domain profile. 236 262 IPR013087 -
Lele2000258g0003 262 MobiDBLite consensus disorder prediction 111 126 - -
Lele2000258g0003 262 MobiDBLite consensus disorder prediction 127 169 - -
Lele2000258g0003 262 Pfam Nucleoplasmin-like domain 3 83 IPR041232 -
Lele2000258g0003 262 MobiDBLite consensus disorder prediction 111 262 - -
Lele2000258g0003 262 SUPERFAMILY beta-beta-alpha zinc fingers 219 256 IPR036236 -
Lele2000258g0003 262 SMART c2h2final6 236 259 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele2000258g0003 1 254 C2H2 Transcription Factor Family AT3G44750 41.288 1.53e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele2000258g0003 NPL 3.6e-12 CL0055