Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele2000228g0008 | ATGGAAACCAAGGATGGCGACGAAATCCATAACTGTTTGATCAATCTGAGAAATTGTCCCAAGAGGCGAAGGGACAAGGTTTACATTGGCTGTGGAGCAGGGTTTGGTGGTGACAGGCCTTTGGCTGCTCTTAAGTTGCTCACAAGAGTCAAAGAACTAAACTACCTGGTACTTGAATGCCTGGCTGAGCGTACTCTTGCTGATCGCTATCAGATCATGATTTCTGGTGGTGATGGTTATGATTCCCAGATTACTGACTGGATGCGTACATTGCTGCCTCAAGCTACAGAAAGAGGAACTTGCATAATTACCAATATGGGTGCAATGGATCCTCTGGGTGCTCAAGCAAAAGTTTTAGAAATAGCTAGCAGCTTGGGGCTTAATGTTTCTGTTTCTGTTGCTCATGAGATATCCACCTCCAATTTAGGTTTAGGATGCTTACCTGAGAGATTGAATAACATGGAGGGTGGTGTCAGCACCTACCTGGGAGCGGCTCCTATTGTTCACTGTCTTGAAAAGTACCAACCAAATGTGATAATCACTTCAAGAATTGCTGATGCTGCTTTATTCTTGGCACCTATGGTTTATGAACTAGGTTGGAATTGGGATGACTTAAATCAGCTAGCACAAGGATCTCTGGCTGGGCACCTTCTAGAGTGTGGCTGCCAACTCACTGGGGGATATTTCATGCATCCAGGAGACAAGTATCGAGATATGCCCTTTGAGCAACTACTGGATTTATCACTTCCGTATGCTGAGATTTGTTTTGATGGACAAGTGTGTGTAGCAAAGGCGGAAGGTAGTGGTGGAGTTCTAAATTTCAGTACATGTGCTGAACAACTTCTTTATGAGGTTGGAGATCCTGGTGCTTATGTAACCCCTGATTTGAATGTTTCTTTCCTTCCATATTCAAGCTGTAGAGTTCTCTGTATGGGGGCAAAACCCTCTACTAAACCAGTTCCTGATGAACTTCTTCAGCTGGTTCCAAAGGAGTGCGGATGGAAGGGATGGGGAGAGATATCTTATGGCGGCTATGAATGTGTAAAACGCGCTAAAGCTGCTGAATTTTTGGTTAGATCATGGATGGGAGAATCGTTTCCCAATCTTAACTCCCAAATTGTTTCTTATATAATTGGATTTGATAGCCTCAAGGCTACCAGCAATGATGGAAATTCTTCATCCTGGGAGGCTAGTGAAGACATAAGGTTACGGATGGACGGACTCTTTATGCAGAAGGAACATGCTGTCCAATTTACTAGAGAATTTACGGCGTTGTATACAAATGGGCCTGCTGGTGGTGGCGGTATCAGTTCTGGATTGAAGAAAGAAATTCTTCTTGAAAAGAGATTGGCTAGGCGCGAGGATGCTTTTTGGCGAATTGGTGTGAAGAGCTGCAGGACAAGCACTTCAGATAAAGTAGCCGTTCCTGAATGCAATCTGAATCACACATTTGCACGGCCACCACATGTAAAAGCTGAAACTGACAATTCTTCCTCAGAATTTGCTTCACCTGCCCCTTCTGGACAGAAGATTCCTCTCTACCGCGTGGCGCACAGCCGAGCTGGTGATAAAGGAAATGACTTAAACTTTTCTCTCATACCACATTTCCTACCTGATGTTGAGAGGTTGAAGATGATTATCACACCTCAATGGGTAAAAGAAGTGGTCTCTCCCCTTTTGAAGTTGTCTGCTTTGGATTCAGATGCCGGAAATGAAAGATACAAATGTTTGAATGATAATGTTAAGGTGGAGATATATGAAGTTAAGGGAATCCAGTCATTGAATGTTGTTGTCAGAAACATCCTAGACGGCGGCGTCAACTGCTCTCGAAGAATCGATCGCCATGGAAAGACCATTTCAGATCTCATTCTCTGCCAACAAGTAGTATTGCCCCCATTATTAGAAATGGCGTTCACAGGAACATTGGATAAATGCAATGCATGTGATAAGACTGTTTATGTGGTGGATCTGTTGTCGCTTGAGGGAGTTCCTTACCATAAATCTTGCTTTAGATGCAGTCACTGCAAGGGGTCCCTTTCGATGAGTAGCTACTCTTCAATGGATGGTGTTCTGTATTGCAAGCCTCATTTTGAGCAGCTTTTCAAGGAATCTGGAAATTTCAGCAAGAATTTTCAGACAGCAAAGTCTTCTGAAAAATCACATGACACGAGCAAGAACTCAAACAAACTCTCTTCATTGTTCAGTGGAACACAAGACAAATGTGCAGTTTGCACTAAAACAGTCTATCCTCTGGAGAAGGTGACCCTGGAAGGAGAATGCTACCACAAGACTTGCTTTAGGTGTGCTCATGCAGGGTGTCCTCTGACAAACTCCTCCTATGCTGCTCTTGATGGTGTCCTGTATTGCAGGCACCACTTTGCTCAGCTTTTCATGGAGAAAGGTTCTTACAACCATGTCAAGCAAGTCACTGCTCACAAAAAGAACTCTGCTTCTGGTCAGCTTGATGACCACCCTATAGATGGCTCTCACCCAGATGATGAACATCCATCTCAGGACCATGATGGCACTAAACATGAAGTAGATGAAGATGAACAATCTTGA | 2562 | 0.4379 | METKDGDEIHNCLINLRNCPKRRRDKVYIGCGAGFGGDRPLAALKLLTRVKELNYLVLECLAERTLADRYQIMISGGDGYDSQITDWMRTLLPQATERGTCIITNMGAMDPLGAQAKVLEIASSLGLNVSVSVAHEISTSNLGLGCLPERLNNMEGGVSTYLGAAPIVHCLEKYQPNVIITSRIADAALFLAPMVYELGWNWDDLNQLAQGSLAGHLLECGCQLTGGYFMHPGDKYRDMPFEQLLDLSLPYAEICFDGQVCVAKAEGSGGVLNFSTCAEQLLYEVGDPGAYVTPDLNVSFLPYSSCRVLCMGAKPSTKPVPDELLQLVPKECGWKGWGEISYGGYECVKRAKAAEFLVRSWMGESFPNLNSQIVSYIIGFDSLKATSNDGNSSSWEASEDIRLRMDGLFMQKEHAVQFTREFTALYTNGPAGGGGISSGLKKEILLEKRLARREDAFWRIGVKSCRTSTSDKVAVPECNLNHTFARPPHVKAETDNSSSEFASPAPSGQKIPLYRVAHSRAGDKGNDLNFSLIPHFLPDVERLKMIITPQWVKEVVSPLLKLSALDSDAGNERYKCLNDNVKVEIYEVKGIQSLNVVVRNILDGGVNCSRRIDRHGKTISDLILCQQVVLPPLLEMAFTGTLDKCNACDKTVYVVDLLSLEGVPYHKSCFRCSHCKGSLSMSSYSSMDGVLYCKPHFEQLFKESGNFSKNFQTAKSSEKSHDTSKNSNKLSSLFSGTQDKCAVCTKTVYPLEKVTLEGECYHKTCFRCAHAGCPLTNSSYAALDGVLYCRHHFAQLFMEKGSYNHVKQVTAHKKNSASGQLDDHPIDGSHPDDEHPSQDHDGTKHEVDEDEQS | 853 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele2000228g0008 | 853 | Pfam | LIM domain | 741 | 796 | IPR001781 | - | |
| Lele2000228g0008 | 853 | Pfam | LIM domain | 645 | 700 | IPR001781 | - | |
| Lele2000228g0008 | 853 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 637 | 670 | - | - | |
| Lele2000228g0008 | 853 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 671 | 711 | - | - | |
| Lele2000228g0008 | 853 | ProSiteProfiles | LIM domain profile. | 739 | 799 | IPR001781 | - | |
| Lele2000228g0008 | 853 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 767 | 806 | - | - | |
| Lele2000228g0008 | 853 | FunFam | LIM domain and actin-binding 1 | 639 | 709 | - | - | |
| Lele2000228g0008 | 853 | Gene3D | Cysteine Rich Protein | 640 | 707 | - | - | |
| Lele2000228g0008 | 853 | MobiDBLite | consensus disorder prediction | 817 | 853 | - | - | |
| Lele2000228g0008 | 853 | SMART | lim_4 | 740 | 792 | IPR001781 | - | |
| Lele2000228g0008 | 853 | SMART | lim_4 | 644 | 696 | IPR001781 | - | |
| Lele2000228g0008 | 853 | ProSitePatterns | LIM zinc-binding domain signature. | 645 | 679 | IPR001781 | - | |
| Lele2000228g0008 | 853 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 733 | 766 | - | - | |
| Lele2000228g0008 | 853 | PANTHER | PROPIONYL-COA CARBOXYLASE | 1 | 632 | - | - | |
| Lele2000228g0008 | 853 | ProSiteProfiles | LIM domain profile. | 643 | 703 | IPR001781 | - | |
| Lele2000228g0008 | 853 | CDD | LIM2_SF3 | 741 | 801 | - | - | |
| Lele2000228g0008 | 853 | FunFam | LIM domain and actin-binding 1 | 735 | 805 | - | - | |
| Lele2000228g0008 | 853 | MobiDBLite | consensus disorder prediction | 810 | 853 | - | - | |
| Lele2000228g0008 | 853 | Pfam | Acyclic terpene utilisation family protein AtuA | 29 | 368 | IPR010839 | - | |
| Lele2000228g0008 | 853 | Gene3D | Cysteine Rich Protein | 735 | 805 | - | - |
Transcription factors information