Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele2000223g0005 ATGGCTGCTGGGAGGCATGGAGGCTATCGCGACAACGAATTTAGGGATCGTGAGTCCAGTTTTGAAGTCTCAAGGCGGGGTTATACTAATTCTGAGGAAGATTACGATCGGATTAGGCCTAGTAGCCGCGATGGTGTGAGAGGTGGGAACACGGGTTCAAGAGACAGTATTAGATTGAGACAGAAGGATACAAGGGAGAGAGAGGCGATGAATGGCAGCTACTACTCATCTTCAAGTAGGAGTAACTCGGGGAGCAGCAGTGGTGGTCTCGGTCCCAGAAAATGTGGTTTTTCTGTCAAGGCAAGGGATAGGGAGCCAGGTGAGCTTTCCAGCGACAGCGGCTCTGATGAAGCTATTGAATCAGAACCACAGGGGAAAGGCTTTGAGGTTGCGAAGGTTGAAAAAAATGGGACTCAGTCTCCATTGGAGAGGAAAAGAAAATTTTCACCTATAGTGTGGGATCAGGATGACAAAGAAGTCAATGTTTCATCCAAACTTAAGGTGTCCACAATTTCTACTACTCTCCCTCCTCCACCACCATTACCAAAATCATTCCGTCAGTCACCTAATGCTCCATATGGTGGAGTGGAGATACATCCCGTGAACAATAGAGAAACTGAGAATCTTGAGGTGCCTACAGCAGTTAAACCACCTCTGTCCTCTGAGTCAGTTCAGGATGTTGATACTGAGTCTACTGAGAGAGCGTTTCCTTTGTCACCGGATCAAAATTTGGGCAATGATCTGGAGGCTGAGCAGCCAGAGGGTGATGAATATGTGCCTATGCATAATATATCATCTTCAAGATGGGCAGCTGGGGATAACTCTCCTGGGGATGAAGGTGAAATTATAGATGATGATGATGAGCTTTCTAAAAAGAAGAGGAGGTTGTCACCTGTGTTATTGAATACCAGAGTACGAAACAAGCTGTTGAGCCCAGATGAATCAAAAAGAGATGGCTATGAAGGAGCTAGAGCTAATTCATCTGAATCTGAAGAAAGAGGTAGCCATGGTAAAATCTCCACCGGGGATGATCATACTGTTATCGGATCTGACAAGGATGACTATATGGATATTGATGGTCAAGGTGTTAAAAGCGAAACTACTGTTAGCCACTCAGATACTGCTTCTGAAGATGAAGATGATGGACGGGAGACTCCAGAGCCTCCAACTCCACCACAAAGAGTTGTCAACATGCTCCAGGGTTGTAGAAGTGTTGATGAGTTTGAGAGACTGAACAAGATAGATGAAGGGACATATGGGGTTGTATATAGGGCCAAAGATAAGAAGACTGGGGAAATTGTAGCATTGAAGAAGGTAAAGATGGAGAAGGAAAAAGAGGGCTTCCCGCTGACTTCTCTAAGGGAAATAAATATTCTACTTTCTTTTCATCACCCATCAATAGTTGATGTTAAAGAAGTAGTTGTAGGTAGCAACCTTGATAGTATTTTTATGGTGATGGAATACATGGAACATGATCTTAAAGGACTGATGGAGGCAATGAAGCAGCCATTCAGCCAGAGTGAAGTGAAGTGCCTTATGCTCCAGCTTTTAGAAGGTGTGAAGTATCTTCATGACAACTGGGTGCTTCATAGGGACTTGAAGACTTCTAACCTGCTTTTGAATAATAGGGGTGAGTTAAAAATTTGTGATTATGGGTTGGCTCGTCAGTATGGGAGTCCATTGAAAACATACACGCATCTGGTTGTTACTCTTTGGTACAGAATTTGTCCACTTAATGGTGCTCTATCTGTTTCTCTCAGGGCACCTGAACTTCTTCTGGGGACAAAACAGTATTCGACAGCCATTGACATGTGGTCTTTGGGTTGCATAATGGCTGAGCTATTGTCCAAAGAGCCATTATTCAACGGGAAGACTGAATTTGATCAAATTGACAAGATCTTCCGTATTCTTGGGACTCCAAATGAAACGATTTGGCCTGGGTTCTCTAAATTACCTGGAGTGAAAGTCAATTTTGTCAAGCATCAGTAA 1989 0.4374 MAAGRHGGYRDNEFRDRESSFEVSRRGYTNSEEDYDRIRPSSRDGVRGGNTGSRDSIRLRQKDTREREAMNGSYYSSSSRSNSGSSSGGLGPRKCGFSVKARDREPGELSSDSGSDEAIESEPQGKGFEVAKVEKNGTQSPLERKRKFSPIVWDQDDKEVNVSSKLKVSTISTTLPPPPPLPKSFRQSPNAPYGGVEIHPVNNRETENLEVPTAVKPPLSSESVQDVDTESTERAFPLSPDQNLGNDLEAEQPEGDEYVPMHNISSSRWAAGDNSPGDEGEIIDDDDELSKKKRRLSPVLLNTRVRNKLLSPDESKRDGYEGARANSSESEERGSHGKISTGDDHTVIGSDKDDYMDIDGQGVKSETTVSHSDTASEDEDDGRETPEPPTPPQRVVNMLQGCRSVDEFERLNKIDEGTYGVVYRAKDKKTGEIVALKKVKMEKEKEGFPLTSLREINILLSFHHPSIVDVKEVVVGSNLDSIFMVMEYMEHDLKGLMEAMKQPFSQSEVKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLLNNRGELKICDYGLARQYGSPLKTYTHLVVTLWYRICPLNGALSVSLRAPELLLGTKQYSTAIDMWSLGCIMAELLSKEPLFNGKTEFDQIDKIFRILGTPNETIWPGFSKLPGVKVNFVKHQ 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele2000223g0005 662 MobiDBLite consensus disorder prediction 97 111 - -
Lele2000223g0005 662 MobiDBLite consensus disorder prediction 1 394 - -
Lele2000223g0005 662 SUPERFAMILY Protein kinase-like (PK-like) 400 655 IPR011009 -
Lele2000223g0005 662 Gene3D Transferase(Phosphotransferase) domain 1 491 662 - -
Lele2000223g0005 662 MobiDBLite consensus disorder prediction 309 360 - -
Lele2000223g0005 662 MobiDBLite consensus disorder prediction 138 163 - -
Lele2000223g0005 662 Gene3D Phosphorylase Kinase; domain 1 393 490 - -
Lele2000223g0005 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 528 540 IPR008271 GO:0004672|GO:0006468
Lele2000223g0005 662 CDD STKc_CDC2L1 402 662 IPR045267 GO:0004674|GO:0005524|GO:0006468
Lele2000223g0005 662 ProSiteProfiles Protein kinase domain profile. 408 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele2000223g0005 662 SMART serkin_6 408 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele2000223g0005 662 MobiDBLite consensus disorder prediction 8 43 - -
Lele2000223g0005 662 MobiDBLite consensus disorder prediction 70 89 - -
Lele2000223g0005 662 MobiDBLite consensus disorder prediction 218 239 - -
Lele2000223g0005 662 PANTHER CELL DIVISION PROTEIN KINASE 406 651 - -
Lele2000223g0005 662 FunFam cyclin-dependent kinase G-2 isoform X1 393 490 - -
Lele2000223g0005 662 Pfam Protein kinase domain 408 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele2000223g0005 662 FunFam Mitogen-activated protein kinase 489 646 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele2000223g0005 399 652 Core Cell Cycle Gene Families AT5G10270 49.071 5.73e-82 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Lele2000223g0005 Pkinase 1.3e-59 CL0016