Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele2000163g0002 ATGGCGATTACACTCAACACTAGACCTTCATTTTTTATCTCTCCCTCCCTAAATCTTCCTTCACTGTGTTTCGCTTCTTCAACCTCCCTGAAAAGCCCTTCCAAATCAGCCTTCTCTTGCCCCTTCCCGCCAACAATTTCCCAATACTTGAACCCTCCTCCCATCCTCACCCGAAGGCTTTTCCTTCCTTCAGTCTCCGGAATATGGGACGCTTTAACCGGAGGCTCCAACAATGCCCGTGAAGCCGTGCTTTCAGTTCGACGTGGAATGCTTCTCTTTAGGCAGGGTGATGTCTCGGGGTCTTTGGCGGAGTTCGACAAGGCAATTGAGTTGGACACTCGTCAAAAGGCATATCTTTGGCAAAGGGGACTATCCTTATACTATCTCGACAGATTTGAGGAAGGCGCGGAGCAGTTTCGTTTAGATGTTGCACAAAATCCAAATGATACGGAGGAGTCCATATGTTGCTTTCTGTGCGAAGCTCAACTACATGGAGTGGATGAAGCAAGGAAGCGATTTCTTGAGGTTGGCGTAGACCCACGGCCTGTCATGAGGGAAGCATATGATATGTTTAGAGACCGCGGGGATCCCGAGAAGCTTGTGGCTGCATTTTCCCAAGGCAGAGAAAGTGAGTATTTTTATGCTTCATTGTATGCCGGGCTTTATTACGAATCTCAGAAAAACTCGGAGAGCGCTAAGCTTCATATAGTTGCTGCTTGCCAGTCACCCTATGGACAAAGATCTGATGATTATATGGCTTCTCTCGCTGAAGTTCACCGTTTTTGTCGAAATTGGTTCAAATGGCGCTTAAAGAAGAAAGCCTCACAAGTTCTCTACTTACATTTCGCTTTGAAGAAACGCGCATTAATTGAAGAATTTCATGACAAGCAGGAGCAGGTAAAAGAATGGCTGCAAAGCTTAGGAATATTTGATCAAACAACGATGGTGCAAGATACTGAAGAACCTGATGATGGGGCTGTGCCCTTACATCAAGAAGACAGTATTAAGAACAGATATGTACCATCCGCGGCAGCCCTACCGATCATTCGTCCATCACTAGGAGGGCAGCAGTTAGTTGCAGATAAAGCAAAACTCGCAATGCAGGGTTACTTGAATCATTTCCTTGGAAACTTGGATATTGTCAATTCTCGAGAGGCAAGTAGTAATGCTCATGATGGATTACTTTGCTTAGATGATTTTTTGCTGATATATTTGCAGGTCTGCAAGTTCTTGGAGGTCTCTAGTTTATCCTTTTTACAGGATTATGGATCAAAAATGAAAGAGGGCTATGTAATGGTGAAGAGCTTATCAAACATCTCAAGGGATTCAGATGTAACATGCTTTCCATGCGAATGGCTGGGTTTGTGTAATAACAATTGGTCCAAGGTGTGGGCTGTCCTGAAACCTGGCTTTTTGGCCTTGCTGGATGATCCTTTCAGCCACACACCGGTAGATATAATTGTTTTTGATATCCTCCCTTCCTCAAGTGAAGATAAGGGTTCCCCAATATATTTGGCTAATCATGTCAAGGAAAGATACATATTTAAGATCCTTATCACTGGATGGTGGCTTTGCCCAGAGCTCTATCTGAAACGTCCTTTTCACTCTCATTCTTCCTTTAGGTTGGACGCATTACTAGAAGAAAAGGCTAAACAAGGAGTTAAGATCTATGGGCTTCTGTACAAGGAGGTCTCCTTAGCTCTAAAAATCAACAGCCTGTCGCACCATGAAAAACTTGTAATCGTTGACTACAAGATTTGCTATTTTGGAGGACTAGATTTATGCTTTGGTCGTTATGACACAACTGAACATAAAGTGGGTGATTTCCCCTCCGAAATATGGCCTGGAAAGGACTATTACAACCCAAGAGAATCTGAACCTAATTCATGGGAAGACACCATGAGAGATGAACTGGATCGTGAAAGGTGTCCCCGCATGCCTTGGCACGACGTCCACTGCGCTATTTGGGGACCTCCCTGTCGTGACATTGCTCGCCACTTTGTTCAACGTTGGAACCATGCTAAGAGAACTAAAGCTCCAAATGAACATGCCATTCCGCTGCTTATGCCTCACCACCACATGGTCATCCCTCACTACTTGGGAAGAAGCAGAGAGATAGATATCGATGGATGCGAAGAAGATGACAAGAAAGAAGTTGAAAGTCAGAATTCGTCTTCGTCACAATCACCCCCGAGAGATATACCATTGCTTCTGCCTCAAGAAGCTGGTGGAGAAGATCTTAAGTTAATTGGGAACGAAATGAATAATAATATCATGGATCAGGCAAATTTTTGCAAAAGCCGAAATCCAAGCGACGAAACTTCAGATGCTAAGGTGGAAGGTTTTCTAAATGAATTTGATCCTTTTGACTCGGAGAGACAATCTCCCATGGATGCTTCAGATTATTGGTGGGAAACACCTGAAGAAGGTTACTGCGATGCCACTGCTATGGACTATGGAGAAGTTGGTCCTCGTTCTAAATGTCGTTGTCAGGTAATCAGGAGTGTCAGCCATTGGTCTGCTGGAACAAGTCAGACTGAAGAAAGCATTCACACTACTTATTGTTCTCTCATTGAAAAAGCGAAACATTTTATCTACATTGAGAACCAGTTTTTCATATCAGGCCTGGCAACAGATGATACTATACAGAACCGTGTATTGGAAGCATTATATAGGCGTATTTTACTGGCTCGCAAAGAGCAAAAGCCTTTTAGAGTTATAATTGTGATGCCTCTATTGCCTGGCTTCCAGGTAAATTTTACTGGCCTTCTTTGCGTAATATTCACTCCTTTATGCAACAGGCTTGAAATAACTCCTGTTGTAAATTGCCATTACCAGGGTGGTCTGGATGACGGTGGTGCAGCAACTGTGAGAGCCATAACACATTGGCAGTATCGAACAATCTCTAGAGAAAAACACTCCATATTAGCCAACCTTAGAGCTGTGCTTGGCCCTAAGACTGAAGATTACATTTCTTTCTATGGTCTGCGTTCTCATGGTAGACTTTCTGCTGATGGACCTATGGTTACAAGTCAGGTCTATGTACACAGCAAATTGATTATCGTAGATGATCGTGCCGCTATAATTGGATCTTCTAATATAAATGATAGGAGTTTGCTAGGTTCAAGAGACTCTGAGATTGGAGTGGTAATCGAAGACAAAGAGTATGTCGAATCATCTATGGATGGAAAGCCATGGAAGGCTGGGAAATTTTCCTATAGCCTCCGTTGCTCATTATGGTCTGAGCACCTTGGTCTTAATACTGGAGAGGTAAATAAAATCAGTGACCCAGTAGCAGATACAACTTACAAGGACTTATGGTCGGCAACTGCAAAGGTGAGACTTGTTCAAGTTTTAAACTTTATCCACATTCCACAGATTCGGTCATTGTGA 3393 0.4332 MAITLNTRPSFFISPSLNLPSLCFASSTSLKSPSKSAFSCPFPPTISQYLNPPPILTRRLFLPSVSGIWDALTGGSNNAREAVLSVRRGMLLFRQGDVSGSLAEFDKAIELDTRQKAYLWQRGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESICCFLCEAQLHGVDEARKRFLEVGVDPRPVMREAYDMFRDRGDPEKLVAAFSQGRESEYFYASLYAGLYYESQKNSESAKLHIVAACQSPYGQRSDDYMASLAEVHRFCRNWFKWRLKKKASQVLYLHFALKKRALIEEFHDKQEQVKEWLQSLGIFDQTTMVQDTEEPDDGAVPLHQEDSIKNRYVPSAAALPIIRPSLGGQQLVADKAKLAMQGYLNHFLGNLDIVNSREASSNAHDGLLCLDDFLLIYLQVCKFLEVSSLSFLQDYGSKMKEGYVMVKSLSNISRDSDVTCFPCEWLGLCNNNWSKVWAVLKPGFLALLDDPFSHTPVDIIVFDILPSSSEDKGSPIYLANHVKERYIFKILITGWWLCPELYLKRPFHSHSSFRLDALLEEKAKQGVKIYGLLYKEVSLALKINSLSHHEKLVIVDYKICYFGGLDLCFGRYDTTEHKVGDFPSEIWPGKDYYNPRESEPNSWEDTMRDELDRERCPRMPWHDVHCAIWGPPCRDIARHFVQRWNHAKRTKAPNEHAIPLLMPHHHMVIPHYLGRSREIDIDGCEEDDKKEVESQNSSSSQSPPRDIPLLLPQEAGGEDLKLIGNEMNNNIMDQANFCKSRNPSDETSDAKVEGFLNEFDPFDSERQSPMDASDYWWETPEEGYCDATAMDYGEVGPRSKCRCQVIRSVSHWSAGTSQTEESIHTTYCSLIEKAKHFIYIENQFFISGLATDDTIQNRVLEALYRRILLARKEQKPFRVIIVMPLLPGFQVNFTGLLCVIFTPLCNRLEITPVVNCHYQGGLDDGGAATVRAITHWQYRTISREKHSILANLRAVLGPKTEDYISFYGLRSHGRLSADGPMVTSQVYVHSKLIIVDDRAAIIGSSNINDRSLLGSRDSEIGVVIEDKEYVESSMDGKPWKAGKFSYSLRCSLWSEHLGLNTGEVNKISDPVADTTYKDLWSATAKVRLVQVLNFIHIPQIRSL 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele2000163g0002 1130 Pfam Phospholipase D Active site motif 573 598 IPR001736 GO:0003824
Lele2000163g0002 1130 MobiDBLite consensus disorder prediction 712 738 - -
Lele2000163g0002 1130 CDD PLDc_vPLD1_2_yPLD_like_2 842 1055 - -
Lele2000163g0002 1130 PANTHER PHOSPHOLIPASE D 517 565 IPR015679 -
Lele2000163g0002 1130 ProSiteProfiles TPR repeat profile. 82 115 IPR019734 GO:0005515
Lele2000163g0002 1130 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 571 598 IPR001736 GO:0003824
Lele2000163g0002 1130 FunFam Binding protein 76 256 - -
Lele2000163g0002 1130 Gene3D Tetratricopeptide repeat domain 78 260 IPR011990 GO:0005515
Lele2000163g0002 1130 SUPERFAMILY TPR-like 87 233 IPR011990 GO:0005515
Lele2000163g0002 1130 Pfam PLD-like domain 855 1057 IPR025202 -
Lele2000163g0002 1130 SUPERFAMILY Phospholipase D/nuclease 822 1058 - -
Lele2000163g0002 1130 SMART pld_4 571 598 IPR001736 GO:0003824
Lele2000163g0002 1130 SMART pld_4 1011 1038 IPR001736 GO:0003824
Lele2000163g0002 1130 Gene3D Endonuclease Chain A 813 1074 - -
Lele2000163g0002 1130 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 1011 1038 IPR001736 GO:0003824
Lele2000163g0002 1130 SUPERFAMILY Phospholipase D/nuclease 517 691 - -
Lele2000163g0002 1130 Gene3D Endonuclease Chain A 541 688 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele2000163g0002 266 517 Phospholipase D Gene Family (Wang group) AT3G05630 58.846 7.96e-79 279