Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele2000126g0030 ATGTCGAACAACACAAGCGGCGAAAGTGGAAGCTTCTTGACGGAGAACCCCGGAGAAGCCGGAGCCAAAGGGCCGGCGGAGGTACTCGGTCAGTTTCACAGTCCAAATTCTCTCACTTCGACAACGACAACTAATAGCAATGGTTCGAACACACCTCCACCTCCTAAGAAGAAGAGAAACCTACCCGGAAATCCAGATCCAAGCGCTGAGGTGATAGCTCTATCACCAATCACCCTAATGGCCACGAACCGATTCATCTGTGAGATTTGCAACAAAGGGTTTCAGAGGGATCAAAACCTGCAATTGCACCGGCGAGGCCATAACCTGCCATGGAAGCTGAAGCAAAGAAGCACCACAGAAGTTCGAAAGAAGGTCTACGTTTGTCCTGAACCATTGTGCGTACACCACAACCCAGCCCGAGCACTGGGTGATCTCACTGGCATTAAGAAGCACTTCTGCAGAAAGCATGGAGAGAAGAAGTGGAAGTGTGACAAATGCTCCAAGAAATACGCTGTTCAATCTGACTGGAAAGCCCACTCTAAGATCTGTGGAACCAGGGAATACAAATGTGACTGTGGCACTATCTTTTCCAGGAGAGATAGCTTCATCACCCATCGAGCTTTCTGTGACGCACTGACTGAGGAGAATAACAAAGCCAGCGAAAGACAAACAATGCAAGGAATGAGCCCGCCGACCTTCCGGGCGGGGCATCAAATTCAGAACCTGGTTTCCTCAGTACATGTGAATAATACCAATAATACGCCGAACCCACAAGCTGGGAACATGGATAACAACAATAATAAGCATCCAATGTCGTCACTGCTTCAGGAGCTCATGCCAATGCCTGCAAATAAACCCTTTAACCATAATATGAATGCAGGAAATCTATTCACGAGAAGCCTCTCTTCTACTTCCTCGGCACCTTCTCTTCAACTAAATGCAAATTCACCCAACGTGTTCGAAGAGAATGGGCAGCACCAACTACAGCTACCACCAGCGGCCGCCGCTTCCTCACAGCTCATGTCTGCGACGGCGCTGCTGCAGAAAGCCGCCCAGATGGGTGCAACTGTGAGCAACTCGTCGCCCATGGCGGAAAAGGGCTTTGTGACTAGCATGGCGCCACCGTCATATGGTCCAAACGGCGGGCTTTCCTTCATGAACCACTATATGCAGAATGGGCAAGAGGATCATATCTCCGGTCAGTATTTAAACGCGAACGGGAGCGTGGGAATGAACGGTGTGGATATGTTTAACGCTATCATGGACGAAAGCAAAGCTTTCTCGAAGATCATAGAGGAGAATAACCGAAGCAATAATGGAGTTTTGCATGGTGGGGCAAGTGGTGGGACTATTAAGGGAAGTGGGGATGTGCTGACGCTGGACTTCATGGGAATAGGAGGAGGAGGAGGAGGAGTCGCGCATGGAAGTTTCTTCGGAAGCCAACACCAACAGGCCGGAGACAAGGGTTCAATTAGAGGAGATGAGATCTGGAGAAATTGGTCCATCAAGAATGCAGGATTTGAATCGTTCTCAGCAACAAGCAGCATCAACTGA 1554 0.4942 MSNNTSGESGSFLTENPGEAGAKGPAEVLGQFHSPNSLTSTTTTNSNGSNTPPPPKKKRNLPGNPDPSAEVIALSPITLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSTTEVRKKVYVCPEPLCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNKASERQTMQGMSPPTFRAGHQIQNLVSSVHVNNTNNTPNPQAGNMDNNNNKHPMSSLLQELMPMPANKPFNHNMNAGNLFTRSLSSTSSAPSLQLNANSPNVFEENGQHQLQLPPAAAASSQLMSATALLQKAAQMGATVSNSSPMAEKGFVTSMAPPSYGPNGGLSFMNHYMQNGQEDHISGQYLNANGSVGMNGVDMFNAIMDESKAFSKIIEENNRSNNGVLHGGASGGTIKGSGDVLTLDFMGIGGGGGGVAHGSFFGSQHQQAGDKGSIRGDEIWRNWSIKNAGFESFSATSSIN 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele2000126g0030 517 SUPERFAMILY beta-beta-alpha zinc fingers 84 181 IPR036236 -
Lele2000126g0030 517 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Lele2000126g0030 517 MobiDBLite consensus disorder prediction 1 69 - -
Lele2000126g0030 517 FunFam protein indeterminate-domain 5, chloroplastic-like 139 218 - -
Lele2000126g0030 517 FunFam protein indeterminate-domain 12-like 64 132 - -
Lele2000126g0030 517 Pfam Zinc-finger double-stranded RNA-binding 85 107 IPR022755 -
Lele2000126g0030 517 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 43 480 IPR031140 -
Lele2000126g0030 517 SMART c2h2final6 161 181 IPR013087 -
Lele2000126g0030 517 SMART c2h2final6 85 107 IPR013087 -
Lele2000126g0030 517 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Lele2000126g0030 517 MobiDBLite consensus disorder prediction 32 54 - -
Lele2000126g0030 517 Gene3D Classic Zinc Finger 140 220 - -
Lele2000126g0030 517 Gene3D Classic Zinc Finger 66 130 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele2000126g0030 40 373 IDZ Gene Family AT3G50700 51.944 4.05e-116 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele2000126g0030 zf-C2H2_jaz 7.6e-05 CL0361