Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele2000104g0040 ATGGGATTCGAGCATACGACTCAGATTCAAGCGAGAGCAATCCCACCGCTCTTGATTGGGAAAGATGTTTTTGGTGCTGCAAGGACGGGTTCTGGAAAAACTCTTGCTTTTCTGATACCAGCTGTGGAGCTGTTGTACCATGCTCAATTCACTCAGCGAAATGGAACTGGTGTCGTTAACTTGAAGTGCCTCATGATTGATGAAGCTGACAGGATATTGGAAGACAACTTTGAGGAGGAAATGAAGCAGATTATTAAAATCTTACCAAAGAATAGGCAAACAGCTTTGTTTTCAGCCAACCAAACAAAGAAGGTTGAAGATGTTGCCCGCTTATCATTTCAGACAACTGCTATGTATGTTGGTGTAGATGATGGGAGAACCAAGGTCACAAATGAAGGATTGCAGCAGGGCTATGTTCTTGTTCCCTACCTTCTCAATTACATACAGATTGATTGCTATAATATACATGGAAAACAAAAGCAGCAAACACGTACTACTACATTCTTTAACTTCTGTAAAGCAGAAACGGGAATTTTACTCTGTACTGATGTTGCTGCCCGTGGACTCGATATACCTGATGTGGACTGGATTGTGCAGTATGATCCTCCTGATGAACCCAAGGAATATATCCACAGGGTTGGTCGAACAGCTCTCGGGGAAGATGGCAAAGGAAATGCTTTTCTTTTCCTGATTCCTGAAGAGTTGCAATTTCTTCGCTATCTAAAGGCAGCAAAGGTTCCTGTGAAAGAATATTTATTTGATGAAAAGAAGCTGTCAAATGTACAATCTCACCTGGCTGTGGCAGCTTCATTCTGTTTCTCAAATCCACCAAAGGTGAGTTTAGGCATAGACAGAAGGGCTTCAAAGCATAGGAAGAAAATGTGTAAGGTTGAAGGAGGCAGACATGGATTCAGCGACAGCAATCCTTATGGTAACAAAATTGCTGCAGATGATAACCGCCAATCTGTGAGGCATTAG 978 0.4223 MGFEHTTQIQARAIPPLLIGKDVFGAARTGSGKTLAFLIPAVELLYHAQFTQRNGTGVVNLKCLMIDEADRILEDNFEEEMKQIIKILPKNRQTALFSANQTKKVEDVARLSFQTTAMYVGVDDGRTKVTNEGLQQGYVLVPYLLNYIQIDCYNIHGKQKQQTRTTTFFNFCKAETGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTALGEDGKGNAFLFLIPEELQFLRYLKAAKVPVKEYLFDEKKLSNVQSHLAVAASFCFSNPPKVSLGIDRRASKHRKKMCKVEGGRHGFSDSNPYGNKIAADDNRQSVRH 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele2000104g0040 325 Gene3D - 55 124 IPR027417 -
Lele2000104g0040 325 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 44 119 IPR014001 -
Lele2000104g0040 325 Gene3D - 140 229 IPR027417 -
Lele2000104g0040 325 SMART ultradead3 2 137 IPR014001 -
Lele2000104g0040 325 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 65 73 IPR000629 -
Lele2000104g0040 325 PANTHER RNA HELICASE 58 142 - -
Lele2000104g0040 325 Pfam DEAD/DEAH box helicase 7 51 IPR011545 GO:0003676|GO:0005524
Lele2000104g0040 325 Pfam Helicase conserved C-terminal domain 141 217 IPR001650 -
Lele2000104g0040 325 CDD SF2_C_DEAD 144 230 - -
Lele2000104g0040 325 Pfam DEAD/DEAH box helicase 58 107 IPR011545 GO:0003676|GO:0005524
Lele2000104g0040 325 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 80 259 IPR001650 -
Lele2000104g0040 325 SMART helicmild6 138 220 IPR001650 -
Lele2000104g0040 325 MobiDBLite consensus disorder prediction 301 325 - -
Lele2000104g0040 325 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 261 IPR027417 -
Lele2000104g0040 325 Gene3D - 1 54 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele2000104g0040 60 228 Eukaryotic Initiation Factors Gene Family AT5G11170 27.805 2.67e-19 85.5