Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele2000104g0020 ATGTCTGTGAATCGGAAGCTCTCTGGGTTAAATGGCAGGATGCCACCAAGTTCCAAGTCAGGCAAGTCAAATGAAGCTTTGCATGAGTCCAATTCTTCACTCAGGAAATGCAAGAAGAAGAAGCCCTTTTTCGTGTGGGGTTTTCTTGGTGTTGTTGCAGTGGGAATTGTATGGTTCTTCATCAGTTCTCACTGTAACTTGTTGATGTTGAGCAAGGAGAAAAGGTTGGATGATTGTGAGGAGAGAGCTCGAATCTTGCTACAACGTCACAATATCAGCAAAAAGCAACTTCATGCTTTCGTTTCCTTCTTCTCTGCATCAGATCAGATTTTATCCCAATGTATCGATGAAAGAAGAGTGCAAAAGCTGTTAAGCGGTGACCCTGGCAATACCTTGCAGATGATATTTTCAGAGAACAAGGAGCATACATGTGTCCCAGGCCAAGTCGAACTTATGGAGCAATGCCCAGTTCTCAATGATTCTGTTCAGAGAAACCTGGAATCATTACTGCTAGTGCAAAAAACTGTATCATTGGCCTCATACTCTGCCATCATGTCCAATTTGGTCAATAATTTGTTTCATGGAAAGAACATTGTGCAGTCATGGGTATTGGAGTTAGTTGCAATTCAGGGTTATCTGACTTTGTCTATAGGATGCTGGTGGATTCTTGTTGTAATTACAATTTGTTGCAGATTGGCTGGCATTCCTTTACTTTGGAATCAGAAGCTGGTTTCACAGCCGAAAGAGTTGCAACATTCTGCTGGGCAAAATCCAAAGGGTGCTGGCAGTTGGAGGAAAAAGCTTTTAGTTACATTTGTGTTACTTGGAATAGTTGTGTCAATTTGGTTGTTCTGGCACCTGAATAATGATATTATGCTGAGGAGAGAAGAAATGCTCACCACTATGTGTGATGAGCGGGCTCGCATGCTGCAGGATCAGTTCAATGTGAGCATGAACCACGTTCATGCTCTGGCTATTCTTGTGTCCACCTTTCACCACAGTAAACATCCATCTGCTATTGACCAGAAGACTTTTGGAGAATATACAGAGAGAACAGCATTTGAAAGACCACTCACTAGTGGTGTTGCTTATGCTCTGAAAGTTCTCCACTCTGATAGGGAGCATTTTGAAAGGCAGCATGGGTGGACCATTAAGAAAATGGAAACTGAGAATGAAACCCTTGTCCAAGATTGTATTCCCGAAAATCTTAATCCTGCACCCATTCAAGATGAATATGCACCAGTAATATTTGCTCAAGAAACTGTTTCCCATATCGTATCTATTGATATGATGTCTGGAAAGGAAGACCGTGAGAATATATTGCGAGCAAGAGCAACCGGAAAGGGAGTGCTAACATCTCCTTTTAAACTACTGAAGTCCAATCACTTGGGTGTTGTCCTTACATTTGCTGTCTACAATGCTAATTTTCCTCCAAATGCTACCCCAGAGCAACGCATTGAAGCTACTGTTGGGTACTTGGGTGCTTCCTATGATGTTCCATCACTGGTGGATAAGCTCCTCCACCAACTTGCCAGCAAGCAAACCATTGTTGTAAATGTTTATGATACAACTAATGCTTCTGCACCTATCAATATGTATGGTACTGATGTTGTTGATACTGGGTTACTACATATAAGCAACCTGGATTTTGGTGATCCTACGCGAAAACATGAGATGCATTGCAGGTTCAAGCACAAGCCTTCACTACCTTGGACAGCAATCAATGCATCAGTTGGGTTACTTGTTATTACTTTGCTTCTTGGTCATATTTTTTATGCAGCAATCAGTCGAATAGCAAAAGTGGAGGATGACTACTGTGAAATGAGGGAGCTTATGGTTCGTGCCGAAGCTGCAGATGTAGCAAAATCTCAGTTTCTGGCAACAGTTTCACATGAGATTAGGACTCCAATGAATGGTGTTTTAGGTATGCTGCAAATGTTGATGGATACTGAACTAGATGAAAGCCAGATGGATTGTGCTCAGACTGCTCACAAGAGTGGTAAAGATCTTATATCAGTGATAAATGAGGTTCTTGACCAGGCTAAGATTGAGGCAGGAAAGCTTGAACTTGAAGCTGTAGAATTTGATCCACGTTCTATTCTAGATGAAGTCCTATCTCTTTTCTCTGGAAAATCTAATGAAATAGGAATTGAGTTGGCTGTTTACGTATCCAAAGTGGTGCCAGAAGTTGTTATTGGTGATCCTAAACGATTCCGGCAAATAATAACTAATCTTGTTGGAAATTCACTTAAGTTCACTCATGTTAAAGGACATGTATTTGTATCGGTTCATTTGGCAAATGAAGTAAAGAGCCCACTTCACGTTATGGATGTAGTGCTGAGTCAAGGGTTCCGGGACATGTCAGACAGAACCTATAATACTTTGAGTGGGTTTCCTGTTGTCAATAGATGGAAAAGCTGGGCAAATTTCAAAAATTTAAGCAGTATGAATCTGATGGCTGAGCCTGGAGTGATTCAATTACTAGTGACAGTCGAGGATACAGGTATAGGAATTCCTTTGGATGCACAAAACCGCATATTCACCCCTTTTATGCAAGCTGATAGTTCCACCTCACGAACATATGGTGGGACTGGAATAGGACTAAGCATTAGTAAATGTTTAGTCGACCTCATGAGAGGAGAAATTGGATTTGTAAGCCAACCTGGAACTGGCAGTACCTTTTCTTTTAGTGCAACTTTCGGGATACCAAAAGCCTCATCTCTGGATACAAAGCGGCAGCAGAGCAACCCTTTTGTTTCAGACTTTGAAGGATTGAGAGCATTTGTGGTGGATAGAAGAAAAATCCGTGCGGAAGTTACAAGATATTATCTGCAGAGGATGGGGATGTCTGTGGATGTTGCTTATAGTCTTAACTCAGCATACTCTTATCTATCTGGTTCTTCCAACAAGAGTATTACTAAACAGTTGGAAATGATTCTGATAGACAAGGATGTTTTGGATAAAGAAAGTAGTCTATTGTATGTCATCAAGAAACAGAGGCAGAACGACATCAAAAGAGACCCAAAAAGTTTTCCCAAGATTTTTCTCTTGGCTAACAGCCGTAGTCCTGATGAACCTGGTGAGCTAAAATCTGTTGGTGTTGTAGATGATATACTAATTAAACCTCTTTGGTTTAGTGCTTTGATTCGCTTCTACAGAGAAGCCCTTGGAAGTGAGAAGAAGCAAATAATTAGAAAGAAAGAACCAAACCTTGGGAACTTGCTAAGACAGAAACATATGTTGGTGGTTGACGATAATGCAGTGAACAGAAAAGTAGCAGAAGGTGTGCTACGAAGATATGGGGCAAAAGTAACCTGTGTGGAGGGCGGCAGGGCTGCCTTAAAGATACTTAAGCCACCACATAGTTTTGATGCTTGTTTCATGGATCTCCAAATGCCAGAAATGGACGGATTTGAAGTGACCAGACAAATCCGCTGTCTGGAGAAAGAGTTAAATGAAAAAATTGCACGTGGTGAAGCATCAACAGAGATGTTTGGTAATGTGGCTCATTGGCACATGCCGATATTGGCTATGACAGCTGATGTAACTCAAGCTTCAGTCGAAGAGTGCAATATGTGTGGGATGGATGACTACGTGTCAAAGCCATTTGAAGAAGAACAGCTCTATGAGGCAGTGGCGCGTTGCTTTGGGTCTGGTTGA 3660 0.4153 MSVNRKLSGLNGRMPPSSKSGKSNEALHESNSSLRKCKKKKPFFVWGFLGVVAVGIVWFFISSHCNLLMLSKEKRLDDCEERARILLQRHNISKKQLHAFVSFFSASDQILSQCIDERRVQKLLSGDPGNTLQMIFSENKEHTCVPGQVELMEQCPVLNDSVQRNLESLLLVQKTVSLASYSAIMSNLVNNLFHGKNIVQSWVLELVAIQGYLTLSIGCWWILVVITICCRLAGIPLLWNQKLVSQPKELQHSAGQNPKGAGSWRKKLLVTFVLLGIVVSIWLFWHLNNDIMLRREEMLTTMCDERARMLQDQFNVSMNHVHALAILVSTFHHSKHPSAIDQKTFGEYTERTAFERPLTSGVAYALKVLHSDREHFERQHGWTIKKMETENETLVQDCIPENLNPAPIQDEYAPVIFAQETVSHIVSIDMMSGKEDRENILRARATGKGVLTSPFKLLKSNHLGVVLTFAVYNANFPPNATPEQRIEATVGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDTTNASAPINMYGTDVVDTGLLHISNLDFGDPTRKHEMHCRFKHKPSLPWTAINASVGLLVITLLLGHIFYAAISRIAKVEDDYCEMRELMVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDESQMDCAQTAHKSGKDLISVINEVLDQAKIEAGKLELEAVEFDPRSILDEVLSLFSGKSNEIGIELAVYVSKVVPEVVIGDPKRFRQIITNLVGNSLKFTHVKGHVFVSVHLANEVKSPLHVMDVVLSQGFRDMSDRTYNTLSGFPVVNRWKSWANFKNLSSMNLMAEPGVIQLLVTVEDTGIGIPLDAQNRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMRGEIGFVSQPGTGSTFSFSATFGIPKASSLDTKRQQSNPFVSDFEGLRAFVVDRRKIRAEVTRYYLQRMGMSVDVAYSLNSAYSYLSGSSNKSITKQLEMILIDKDVLDKESSLLYVIKKQRQNDIKRDPKSFPKIFLLANSRSPDEPGELKSVGVVDDILIKPLWFSALIRFYREALGSEKKQIIRKKEPNLGNLLRQKHMLVVDDNAVNRKVAEGVLRRYGAKVTCVEGGRAALKILKPPHSFDACFMDLQMPEMDGFEVTRQIRCLEKELNEKIARGEASTEMFGNVAHWHMPILAMTADVTQASVEECNMCGMDDYVSKPFEEEQLYEAVARCFGSG 1219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele2000104g0020 1219 Pfam His Kinase A (phospho-acceptor) domain 621 686 IPR003661 GO:0000155|GO:0007165
Lele2000104g0020 1219 MobiDBLite consensus disorder prediction 1 30 - -
Lele2000104g0020 1219 FunFam Histidine kinase 4 593 684 - -
Lele2000104g0020 1219 SMART HKATPase_4 733 902 IPR003594 -
Lele2000104g0020 1219 SUPERFAMILY CheY-like 921 1056 IPR011006 -
Lele2000104g0020 1219 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 607 687 IPR036097 GO:0000155|GO:0007165
Lele2000104g0020 1219 Gene3D - 287 339 - -
Lele2000104g0020 1219 Gene3D - 69 108 - -
Lele2000104g0020 1219 ProSiteProfiles Response regulatory domain profile. 1079 1216 IPR001789 GO:0000160
Lele2000104g0020 1219 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 675 897 IPR036890 -
Lele2000104g0020 1219 Gene3D - 593 684 - -
Lele2000104g0020 1219 ProSiteProfiles CHASE domain profile. 336 560 IPR006189 -
Lele2000104g0020 1219 Gene3D CHASE domain 340 567 IPR042240 -
Lele2000104g0020 1219 FunFam Histidine kinase 4 340 567 - -
Lele2000104g0020 1219 Coils Coil 69 89 - -
Lele2000104g0020 1219 ProSiteProfiles Histidine kinase domain profile. 628 902 IPR005467 -
Lele2000104g0020 1219 CDD HATPase_EvgS-ArcB-TorS-like 738 900 - -
Lele2000104g0020 1219 CDD REC_hyHK_CKI1_RcsC-like 1081 1212 - -
Lele2000104g0020 1219 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 733 898 IPR003594 -
Lele2000104g0020 1219 Gene3D - 1073 1218 - -
Lele2000104g0020 1219 CDD HisKA 621 682 IPR003661 GO:0000155|GO:0007165
Lele2000104g0020 1219 ProSiteProfiles Response regulatory domain profile. 926 1056 IPR001789 GO:0000160
Lele2000104g0020 1219 Gene3D - 685 903 IPR036890 -
Lele2000104g0020 1219 SUPERFAMILY CheY-like 1076 1216 IPR011006 -
Lele2000104g0020 1219 Pfam Response regulator receiver domain 1081 1212 IPR001789 GO:0000160
Lele2000104g0020 1219 SMART CHASE_2 336 535 IPR006189 -
Lele2000104g0020 1219 SMART HisKA_10 621 686 IPR003661 GO:0000155|GO:0007165
Lele2000104g0020 1219 SMART REC_2 1078 1212 IPR001789 GO:0000160
Lele2000104g0020 1219 Pfam CHASE domain 339 533 IPR006189 -
Lele2000104g0020 1219 Gene3D - 923 1068 - -
Lele2000104g0020 1219 PANTHER TWO-COMPONENT HISTIDINE KINASE 236 1211 - -
Lele2000104g0020 1219 MobiDBLite consensus disorder prediction 1 31 - -
Lele2000104g0020 1219 PRINTS Bacterial sensor protein C-terminal signature 862 880 IPR004358 GO:0016310|GO:0016772
Lele2000104g0020 1219 PRINTS Bacterial sensor protein C-terminal signature 827 841 IPR004358 GO:0016310|GO:0016772
Lele2000104g0020 1219 PRINTS Bacterial sensor protein C-terminal signature 845 855 IPR004358 GO:0016310|GO:0016772
Lele2000104g0020 1219 PRINTS Bacterial sensor protein C-terminal signature 886 899 IPR004358 GO:0016310|GO:0016772
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele2000104g0020 42 1216 Miscellaneous Gene Families AT5G35750 57.683 0.0 1324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele2000104g0020 CHASE 4.1e-35 CL0165