Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele2000104g0016 ATGCTACCTCCACGTCAGCAATCTCGTGTTGGAGGACTGCAAACTTCACTATCCCTAGTTTCTTCAAATCCTCGTCTCTCTCCTGAGGAACCTAGATCAAACTCTGACAACATTCGAGAATCTCCTACTGAAAGTGCCAGTTCACGAGAAACTTGGCCTGTTGCCGAAGCTATTGAGGGAAAGAAGATGGATAATGGGAAGGCTGAGAATGATCATCTTGAGCAGTCAGTCATCCATCGTGTTTCTAGTGCTGACAAAATTACTCTTCAGGACATAGGAAGAGAAAGGGTTGACATAATCTCTGAAAAGATGCATCATCTACCTGAAGAATTTCTAGAAGAGCTGAAGAACAGTCTTCGAGTGATCCTTGAGGGAGGGAATGGTTCACAGCACAGGGAGGAATTTTTCATTTTGCAGAGGCTTGTTCAAAGTAAAACTGATTTAACAGCCAAGACTTTGATTAGAGCACATCGTGTGCAGCTTGAAATCCTTGTTGCTATTAATACTGGAATTCAGGCATTTTTGCATCCCAACATCAGCCTTTCACAACCTTCCCTCATTGAGATCTTTGTGTACAAGAGATGTAGAAATATAGCATGTCAAAACCAGCTTCCTGCTGATGACTGTACCTGTGAAATATGCACAAGCAGAAATGGTTTCTGTAATCTCTGCATGTGTGTGATCTGCAACAAGTTTGACTTTGAAGTAAATACGTCCCGCTGGATTGGATGTGATTTATGCTCTCATTGGACTCATACAGATTGTGCCATTCGTGATCAACTTATTTGCATGGGCCCTTCTGCAAAGAGTGGTGCAGGACTAAGTGAAATGGTTTTCAGGTGCCACGCGTGCAAGAGGACTTCAGAACTGTTGGGTTGGGTTAAAGATGTTTTTCAGTATTGTGCGCCATCTTGGGATGGGGAGGCTTTAATGAGGGAACTTGATTTTGTTAGCAGGATCTTTCACGGTAGTAAAGACCCCAGAGGGACGAAACTATTCTGGAAGTGTGATGATCTAAAGGAGAAAATGAAAAGTGGAATAGTGGAACCAAATACTGCCTGCCGGGCAATATTGTTGTTTTTCCAAGAGCTTGAGGTGGACTCCCCAAAGAGCCTTGAAAATGGAGAAAGTGGAAGGATGATTGCTCCACATGATGCATGCAATAGAATTGCTGACGTAGTGCAGGAGGCTATAAGAAAAATGGAAATGGTAGCTGATGAGAAGATGAGAATGTTCAAGAAGGCTCGCTTGGCTCTTGAGGCTTGTGATAGAGAATTGGCAGATAAGGCGAGGGAAGCAGCAGAACTAAAGATGGACAGGCAAAAAAAGAAATTACAGAGAGAAGAACTGGAGAGAATCGTGAGGCTTAAAACTGCAGAGGCTGATATGTTCCAGCTTAAGGCTAATGAGGCTAAACGAGAGGCCGAGAGGCTCCAGAGAATCGCTCTTGCCAAATCGGATAAATCAGAGGAAGAATATACTAGCAACTACTTGAAACAACGATTAAGTGAGGCTGAAGCTGAGAAGCAATACCTCTATGAGAAGATCAAATTGCAGGAGAGTTCTCGTGCTTCGCAGAGTAGTAGTGGCGGTGACCCATCTCAGATGCTGATGTATTCCAAAATCCATGATCTGCTCTATGGTGTTCCTCCCAAGGCAGATAGTCAGCCTAATGAGCGTCACCCATTCCGAACAAATACATGA 1704 0.4366 MLPPRQQSRVGGLQTSLSLVSSNPRLSPEEPRSNSDNIRESPTESASSRETWPVAEAIEGKKMDNGKAENDHLEQSVIHRVSSADKITLQDIGRERVDIISEKMHHLPEEFLEELKNSLRVILEGGNGSQHREEFFILQRLVQSKTDLTAKTLIRAHRVQLEILVAINTGIQAFLHPNISLSQPSLIEIFVYKRCRNIACQNQLPADDCTCEICTSRNGFCNLCMCVICNKFDFEVNTSRWIGCDLCSHWTHTDCAIRDQLICMGPSAKSGAGLSEMVFRCHACKRTSELLGWVKDVFQYCAPSWDGEALMRELDFVSRIFHGSKDPRGTKLFWKCDDLKEKMKSGIVEPNTACRAILLFFQELEVDSPKSLENGESGRMIAPHDACNRIADVVQEAIRKMEMVADEKMRMFKKARLALEACDRELADKAREAAELKMDRQKKKLQREELERIVRLKTAEADMFQLKANEAKREAERLQRIALAKSDKSEEEYTSNYLKQRLSEAEAEKQYLYEKIKLQESSRASQSSSGGDPSQMLMYSKIHDLLYGVPPKADSQPNERHPFRTNT 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele2000104g0016 567 Coils Coil 419 453 - -
Lele2000104g0016 567 Pfam PHD - plant homeodomain finger protein 195 318 IPR032881 -
Lele2000104g0016 567 Coils Coil 461 488 - -
Lele2000104g0016 567 SMART PHD_3 225 285 IPR001965 -
Lele2000104g0016 567 CDD PHD_OBE1_like 225 284 - -
Lele2000104g0016 567 MobiDBLite consensus disorder prediction 1 52 - -
Lele2000104g0016 567 MobiDBLite consensus disorder prediction 548 567 - -
Lele2000104g0016 567 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 27 547 IPR004082 -
Lele2000104g0016 567 MobiDBLite consensus disorder prediction 1 31 - -
Lele2000104g0016 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 160 175 IPR004082 -
Lele2000104g0016 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 232 252 IPR004082 -
Lele2000104g0016 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 145 160 IPR004082 -
Lele2000104g0016 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 186 207 IPR004082 -
Lele2000104g0016 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 448 468 IPR004082 -
Lele2000104g0016 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 487 509 IPR004082 -
Lele2000104g0016 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 103 125 IPR004082 -
Lele2000104g0016 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 305 324 IPR004082 -
Lele2000104g0016 567 PIRSF UCP025218 1 553 IPR004082 -
Lele2000104g0016 567 Pfam Coiled-coil region of Oberon 413 546 IPR032535 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele2000104g0016 195 297 PHD Gene Family AT5G57380 32.692 1.36e-09 58.9