Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele2000102g0108 ATGGTAAGCTGTTTGAAATATTCTCCGAGTTCAAGAGCCTCACTTCTGTTCGGGTCTGTAGGGACTCCTCTACCGGCAAGTAGCTCTGTTACGGCTACCTTAGTTATTGCGAAGGATGACAATGGGATTTCAAAGGGTTTTGGCTTCGTGAACTATGATAACCCAGATGATGCCAGACTGGCAATAGAAGGAATGAATGGATCACAACTTGGTTCAAAGATTCTATACGTAGCCAGAGCACAAAAGAAGGCCGAACGTGAGCTTATTTTGCACCATCAGTTTGAGGAGAAACGCAAGGAACAAATCTTAAAATACAAGAGGCAGAAGATTCATGACGTAAGTGATGAAGAACTACGGAATCTTTTTTTTCGTGCATGTGGCTCAATAACATCTGCAGTAGTTATGCGAGATGGCAAAGGTATAAGCAAGGGGTTTGGTTTCGTCTGCTTCTCTAACCCTGAGGAGGCTAATAAAGCTGTGAACACCTTTCATGGATGTATGTTTCATCCCAAACCATTACATGTTGCTATTGCTCAAAGAAAGGAGGATAGGCAAGCACAATTGCAGATTCAACATGCACAGCGAATGGCAGGACTATCTGGACCTTCAGTAGCTGTTATTCCTGGCGGATATTCTCCTTATTATTATGCAGCTACCGGGGCCGTTTCACGGGTTCCTTCTCGACCTAGCATAATGTATCAACCTTTGGGGTTGACACAGGGATGGAGGGCTAATAGCTTTGCACCTCCTACCAGACCATTTCAACAGCCACTAGTTCCTATGGTTTCCAATTCTACAAGGCAAAATAGGCAAAACAAAGACATGGAGCTACCTAGAGGACGAACCTTCAAGTATCGTCCTCCTCGTCATATTGGTACATATCTCTTCAGAGTTTGCTTCCCAGCAACTGCCGTTGCCGCTGCAATTCCACCGATCGCACCCACAATAGCAGCCGATCGCGGTGCTGTCGTCAGATTTCAGAAATTGGGTGCTGTAGCAAGAACCAGATCTCCAATGTCCTTTCTTGTTCCGATTGGTTGTGGTGTAGCTGAATGTGTGGCATGTGTTTCTGCTGTGATTTCGCTCTGGTCAGCTTTTGGTGTTAGTCGCAACCATGGGAAGATGTTGGATATTGCTACTTTCTTAGATCTGGAAATTTCAGTTTTTATGAAGAAGGATTATAAGCACTTGAAGGATAGAATATGA 1206 0.4436 MVSCLKYSPSSRASLLFGSVGTPLPASSSVTATLVIAKDDNGISKGFGFVNYDNPDDARLAIEGMNGSQLGSKILYVARAQKKAERELILHHQFEEKRKEQILKYKRQKIHDVSDEELRNLFFRACGSITSAVVMRDGKGISKGFGFVCFSNPEEANKAVNTFHGCMFHPKPLHVAIAQRKEDRQAQLQIQHAQRMAGLSGPSVAVIPGGYSPYYYAATGAVSRVPSRPSIMYQPLGLTQGWRANSFAPPTRPFQQPLVPMVSNSTRQNRQNKDMELPRGRTFKYRPPRHIGTYLFRVCFPATAVAAAIPPIAPTIAADRGAVVRFQKLGAVARTRSPMSFLVPIGCGVAECVACVSAVISLWSAFGVSRNHGKMLDIATFLDLEISVFMKKDYKHLKDRI 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele2000102g0108 401 SUPERFAMILY RNA-binding domain, RBD 112 200 IPR035979 GO:0003676
Lele2000102g0108 401 PANTHER OS02G0815200 PROTEIN 29 181 - -
Lele2000102g0108 401 Gene3D - 111 197 IPR012677 -
Lele2000102g0108 401 Gene3D - 15 110 IPR012677 -
Lele2000102g0108 401 SUPERFAMILY RNA-binding domain, RBD 35 86 IPR035979 GO:0003676
Lele2000102g0108 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 180 IPR000504 GO:0003723
Lele2000102g0108 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 172 IPR000504 GO:0003723
Lele2000102g0108 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 74 IPR000504 GO:0003723
Lele2000102g0108 401 SMART rrm1_1 14 78 IPR000504 GO:0003723
Lele2000102g0108 401 SMART rrm1_1 102 176 IPR000504 GO:0003723
Lele2000102g0108 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 82 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele2000102g0108 33 280 Eukaryotic Initiation Factors Gene Family AT2G36660 49.027 1.37e-69 228