Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele2000102g0072 ATGAACAAATGTGCGGTTAAGTTACAGATGGAGGGAAAGACCAAGGAAGTGGAAGATATTGGAAGTGCTTCTAGTAGTTCATTTATTGATGATTCAGATGATGGGTCTTCAGGTTCTGAATTAGACGACAAAGCACATCTCGAGGAACCTTTGACTGAGGAAGAAATAGAAGGTCTGATTGCTGAGTTGTTAGAAGTTGAGAGCAAGGCTGCAGAGGCTCAAGAAGCTCTTGAGGAGGAGTCTCTTAACAAAGTAGAGATTGAGGTTAGGCAAGAGTTGGAGCAAACTCTTCAAGGGGATGATTTGGAATCTGCTGTTGCAGATGAGATGACTACTTTAAAAGAAGAGTGGGAAGCTGTTCTGGATGACCTTGAGACTGAAAGTGCCTATTTGCTGGAACAACTTGATATGGCTGGTGTTGAGCTGCCAAGGCTTTATAAGTGGATAGAAAGGGAGGCTCCTAATGGTTGTTTGACTGAAGCTTGGAAAAAGAGGAATCATTGGGTAGGTACTCAGGCAACTGAAGAATTTTCTGAGTCAGTTGCTGATGCTGAGAAGCATCTACAAGTCTACAGACCTGTTGGAAGACGACATGGTAAACTATTGGAAGAGGGTGCTAGTGGATTTCTTCAAAAAAAACTTGATGAATCCAGTGAACCGGTAAAGGAAAAAACTGAGGTAGATTGGGATATGTTTAACAAACTATTTCATGATGGTGGTGGTGGTGATGCTGATGCTTCATTTGGCAGTAAGAATTGGGCTTCTGTTTATTTGGCCTGCACTCCACAGCAAGCTGCACTGATGGAACTCGAATTTCCTGGTGTTAATGAGGTGGAGGAGATTGATGACATTGATGGCACTTCTACTGATCCATTTATTGCAGCTGCAATTGCAAATGAAAAAGAACTTGAACTTTCTGATGAACAGAAGAGAAAATTTAAAAAGGTCAAAGAAGAAGATGATGTAATTGTTGATCGGAAGCTTCAAGTCCATTTAAAACGAAGGAGGTATCGAAAGAATAAAAACCAGAGGGAAACTATAGAGAGTCTCAAACAGAAGTCTTCATCTGTTGATTGTTCTAATCCTGATATGAAGGAAGAAACTTGTGAGGATGGTGAAAAGGTGACCAACGAGGAAGTTGAATGTCTAAATATGAAGAATGATAATATTGAATATTTGGGTAGCAGTTATGACCTTGACAAATTGAAGCCTATGAATATTGGTCCTTTGTCAGAGCTCTCTAAATCTTCACTGCCTGATGGTGAACACAGAGGTACCAAGCGACTTAATGATGATGAAGAGTATAGTGATACTAAAAAGGGTCGGACTGTCACTATTAACAGTGGTGATGAAGCTGATGCAGTTGAAAATAATATAGTTAGGAATACAAATGCATTAGATGATCAGGCTGAGATGCAAGGCACCTGTACCAGCATTGCTGAAAGTGTTCCTTCACAGCATATGGAAAAGAAATTTTGCTGCACTGTTTGTGACAAAGTGGCTCTTGAAGTTCACCAACATCCTCTTTTGAAAGTGATTATTTGCAGGGATTGCAATTCTATAATGGAAGAAAAGAAACGTGTGAAGGATCTCAATCCTGATTGCTCCGAGTGTTATTGTGCATGGTGTGGAGGAAGCAGTGAATTAGTTAGCTGCAAGTCCTGCAAAGTGTTATTCTGCAACAACTGCATAAAAAAGAATCTTGGTACAGAATTCCTTTCTGAAGTTCAGGTCACTGGTTGGCATTGTTGTTGCTGTGACCCAAATCTCTTGCAAAAACTATCATTAGAACTAGAGAAAGCTATGGGATCTGTTGAAACATCAGCTTCCAGCTCTAGTAGTGATTCAGATAATTCACATGCAGAGATCAATGTTACAATCAGTTCTAAGCGAAAGCGCAAAAAGAAGATTAGGAGGATCCTTGATGACGCTGAATTAGGAGAGGAAACAAAAAGGAAAATTGCAATAGAAAAGGAGCGTCAGGAACGTTTGGAGTCTTTGCGAGTGCAGTTTTCTGCCTCATCTAACAGCATGGGCTCTTCTGGGTATAACGGGAATTTATCTGAAGGTGCAAGTTTGGAAGTCCTTGGTGACTCATTAACAGGCTATGTAGTGAATGTTGTGAGGGAAAAAGGTGAAGAAGCTGTCAGAATTCCTCCTAGTATATCGGCTAAACTGAAAACTCATCAGATTGCAGGAATAAGATTTATGTGGGAGAATATAATACAGTCAATCAGAAAAGTGAAGTCCGGGGATAAAGGTCTTGGTTGTATTCTCGCTCATACAATGGGCCTTGGTAAAACCTTTCAGGTGATAGCTTTCTTGTACACAGCAATGAGAAGCACTGATCTGGGGTTAAGAACTGTACTTATTGTCACGCCTGTCAATGTGCTGCACAATTGGCGGCAGGAGTTTATCAAATGGAGGCCATCAGAAGTAAAACCACTTAGGGTCTTCATGCTGGAAGATGTATCAAGGGATAGGAGAGCAGAAATACTTGCAAAATGGAGAAACAAAGGTGGCATATTTCTGATTAGTTATACTGCTTTTCGAAATTTATCTTTTGGAAAGAATGTGAAAGATCGACACGCAGCCCGAGAAATTTGCCGTGCTTTGCAGGATGGACCAGACATACTTGTTTGTGATGAAGCCCATATGATAAAGAATATAAAGGCTGACACAACCCAAGCCTTGAAACAAGTAAAATGCCATAGAAGAATTGCACTGACTGGATCACCTCTTCAGAACAATCTCATGGAGTACTATTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGTCATGAATTTAGGAATCGCTTCCAAAATCCTATAGAGAATGGTCAACATACTAATTCTACGCTGGATGATGTGAAGATTATGAACCAAAGGTCTCACATCCTCTATGAACAATTAAAAGGCTTTGTTCAACGAATGGACATGAATGTGGTGAAGAAGGATTTGCCTCCAAAAACTGTCTTTGTGATAAGTGTCAAGCTTTCTCCCCTACAGAGGAAACTGTACAAGAGATTCCTTGATGTGCATGGATTCACCAATGACCGGGCTTCTAATGAAAAAATGAGAAAGAGATGTTTTTTTGTTGGGTACCAGGCATTAGCTCAGATATGGAACCATCCTGGGATCTTGCAATTGACAAAAGAAGACAAGGACTATGTAAGACAAGAAGATGCAGTTGAGAATTTTCTTGTGGATGACAGCTCGAGTGACGAAAATTCTGATTATAACGGGCCTGTTGGAGGGAAGGTTAGATGTGCAAATGAGTTTCTGCAAAGGAAAGATGGGAATGGCTTTTTACTAAAGGGTTGGTGGAATGATCTTCTGCATGAAAAAAATTATAAAGAACTTGATTACAGTGGCAAAATGGTTTTGCTTCTGGACATACTAACCATGAGTTCTGATGTGGGTGACAAGGTGTTGGTTTTTAGCCAGAGCATACCAACACTAGACCTCATAGAACTTTATCTATCAAGATTACCTCGGCGAGGCAAACGTGGGAAATTTTGGAAGAAGGGAAAAGACTGGTATAGGCTGGATGGAAGGACAGAGAGCTCTGAAAGGCAGAAGATGGTTGAGAGGTTTAATGAGCCTTCCAATAATAGAGTGAAGTGCTCTCTTATTTCAACCAGAGCTGGTTCTTTGGGTATCAATCTCCATGCAGCTAATCGTGTTGTTATAGTTGATGGTTCTTGGAATCCAACATATGATCTCCAGGCCATCTATCGAGCTTGGAGGTATGGCCAGAGAAAGCCTGTGTTTGCTTACCGATTGCTGGCTCATGGAACTATGGAAGACAAAATATATAAGCGCCAGGTAACAAAGGAGGGGCTTGCTGCTAGAGTGGTTGACAGACAGCAAGTGTACAGGACTGTATCTAAAGAAGAGATGTTACATCTCTTTGAATTTGGCGATGATGAAAACCCTGAGGCATTGGCTGAACTGAGCCAAGAGAATGGGCATTCGGTGGAACAGACAGTACCACATTCAAATGGAACCAGCCATTCTGATAAGTTGATGGAAAGCTTAATCAGCAAGCATCATCCAAAGTGGATTGCCAATTTTCATGAGCACGAAACCTTATTGCAAGAGAATGAAGAAGAAAAGCTATCAAAAGAGGAGCAAGACATGGCTTGGGAAGTATACCGGAAAACGTTAGAATGGGAGGAAGTGCAGAGAGTGCCACTGGGTGAATCTGTGCCTGTTCAAAAACCACAAGAGCCAAATGCTGCAGCAGCCCTTGTATCATCGAAGACCCGCAGCCTCTCACCAACAAGGTTGAGGAACCGTTTTGTGACCCGCAAGTGCACCAACCTTTCACACTTGCTGACGCTTAGAAGTCAAGGCACTAAATTTGGTGGCAGTACAGTCTGTGGGGAATGCGCCCAAGAGATCAGATGGGAGGACTTGAAAAGAGATGGAAAAGCCGCAAGGTGA 4458 0.4148 MNKCAVKLQMEGKTKEVEDIGSASSSSFIDDSDDGSSGSELDDKAHLEEPLTEEEIEGLIAELLEVESKAAEAQEALEEESLNKVEIEVRQELEQTLQGDDLESAVADEMTTLKEEWEAVLDDLETESAYLLEQLDMAGVELPRLYKWIEREAPNGCLTEAWKKRNHWVGTQATEEFSESVADAEKHLQVYRPVGRRHGKLLEEGASGFLQKKLDESSEPVKEKTEVDWDMFNKLFHDGGGGDADASFGSKNWASVYLACTPQQAALMELEFPGVNEVEEIDDIDGTSTDPFIAAAIANEKELELSDEQKRKFKKVKEEDDVIVDRKLQVHLKRRRYRKNKNQRETIESLKQKSSSVDCSNPDMKEETCEDGEKVTNEEVECLNMKNDNIEYLGSSYDLDKLKPMNIGPLSELSKSSLPDGEHRGTKRLNDDEEYSDTKKGRTVTINSGDEADAVENNIVRNTNALDDQAEMQGTCTSIAESVPSQHMEKKFCCTVCDKVALEVHQHPLLKVIICRDCNSIMEEKKRVKDLNPDCSECYCAWCGGSSELVSCKSCKVLFCNNCIKKNLGTEFLSEVQVTGWHCCCCDPNLLQKLSLELEKAMGSVETSASSSSSDSDNSHAEINVTISSKRKRKKKIRRILDDAELGEETKRKIAIEKERQERLESLRVQFSASSNSMGSSGYNGNLSEGASLEVLGDSLTGYVVNVVREKGEEAVRIPPSISAKLKTHQIAGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSTDLGLRTVLIVTPVNVLHNWRQEFIKWRPSEVKPLRVFMLEDVSRDRRAEILAKWRNKGGIFLISYTAFRNLSFGKNVKDRHAAREICRALQDGPDILVCDEAHMIKNIKADTTQALKQVKCHRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVISVKLSPLQRKLYKRFLDVHGFTNDRASNEKMRKRCFFVGYQALAQIWNHPGILQLTKEDKDYVRQEDAVENFLVDDSSSDENSDYNGPVGGKVRCANEFLQRKDGNGFLLKGWWNDLLHEKNYKELDYSGKMVLLLDILTMSSDVGDKVLVFSQSIPTLDLIELYLSRLPRRGKRGKFWKKGKDWYRLDGRTESSERQKMVERFNEPSNNRVKCSLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQRKPVFAYRLLAHGTMEDKIYKRQVTKEGLAARVVDRQQVYRTVSKEEMLHLFEFGDDENPEALAELSQENGHSVEQTVPHSNGTSHSDKLMESLISKHHPKWIANFHEHETLLQENEEEKLSKEEQDMAWEVYRKTLEWEEVQRVPLGESVPVQKPQEPNAAAALVSSKTRSLSPTRLRNRFVTRKCTNLSHLLTLRSQGTKFGGSTVCGECAQEIRWEDLKRDGKAAR 1485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele2000102g0072 1485 MobiDBLite consensus disorder prediction 38 53 - -
Lele2000102g0072 1485 Pfam SNF2-related domain 748 1050 IPR000330 GO:0005524|GO:0140658
Lele2000102g0072 1485 SMART ultradead3 722 943 IPR014001 -
Lele2000102g0072 1485 MobiDBLite consensus disorder prediction 417 440 - -
Lele2000102g0072 1485 ProSiteProfiles ADD domain profile. 482 614 IPR025766 -
Lele2000102g0072 1485 Gene3D - 991 1342 IPR027417 -
Lele2000102g0072 1485 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1135 1303 IPR001650 -
Lele2000102g0072 1485 MobiDBLite consensus disorder prediction 19 34 - -
Lele2000102g0072 1485 CDD SF2_C_SNF 1123 1266 - -
Lele2000102g0072 1485 PANTHER RAD54-LIKE 33 1481 IPR044574 GO:0016887
Lele2000102g0072 1485 MobiDBLite consensus disorder prediction 1 54 - -
Lele2000102g0072 1485 MobiDBLite consensus disorder prediction 1325 1343 - -
Lele2000102g0072 1485 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 748 931 IPR014001 -
Lele2000102g0072 1485 Pfam Helicase conserved C-terminal domain 1131 1255 IPR001650 -
Lele2000102g0072 1485 MobiDBLite consensus disorder prediction 339 372 - -
Lele2000102g0072 1485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 986 1326 IPR027417 -
Lele2000102g0072 1485 MobiDBLite consensus disorder prediction 410 440 - -
Lele2000102g0072 1485 CDD ADDz_ATRX 490 588 - -
Lele2000102g0072 1485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 712 980 IPR027417 -
Lele2000102g0072 1485 Coils Coil 107 134 - -
Lele2000102g0072 1485 Coils Coil 56 90 - -
Lele2000102g0072 1485 Gene3D - 700 980 IPR038718 -
Lele2000102g0072 1485 SMART helicmild6 1158 1255 IPR001650 -
Lele2000102g0072 1485 MobiDBLite consensus disorder prediction 1321 1343 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele2000102g0072 790 1308 RAD5 or RAD16-like Gene Family AT5G22750 25.945 3.76e-30 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele2000102g0072 SNF2_N 3.8e-51 CL0023