Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele2000102g0062 ATGGGGACAGAACTCACTAGAACATGTGTTCAAGAAGAGAACGATGAGTTTCCATCAGTTCCACCTGGCTTTGAGTCATATACATCTTCCTCACTGGATAGGGGGGAAGGCATTGAGAAACAGAATGACAAAAACATTACTAGTTTTTCAGTCTCTACAAGTGTTTCTAATTGTAAATTACACTCAATTCAGGCTAAAACCGATGTTCAAGCTAGTGATACTGCAAAGGTTCCTAGGTCCCTTGGACGAAGACGATGGATCAACCATGGACGGTATGATAACAGTTCAGAGGAAGACTCTGATTCTGAGCGGCTTGATCAAAATTTCTCATCAGTACCTTGTCTTCCAAAGGGAGTTATCCGTGGATGTCCAGATTGCAGTAATTGCCAAAAGGTTATTGCCAGATGGAGGCTGGAAGATGCTTGCAGGCCCACCCTTGAGGATGCTCCTGTTTTTTACCCAACCGAAGAGGAGTTTCAAGATCCCATGAAATATATAGCAAGTATTTGTTCTAGAGCAGAACCTTATGGCATTTGTCGCATCGTTCCCCCTTCATCTTGGAAGCCCCCTTGTCCTCTTAAGGGAAAGACTATATGGGGGGATTCTAAATTTGCTACTCGTGTTCAGAGGATTGATAAGCTCCAGAACCGTTATTCAATGAGAAAGATGTCAAGGATTCATTTTAATACTAGACAGAAAAGGAAAAGATGCCCTAGAATGGGATTGGATAATGGCAGTAATAGAGGACCTAATGCAGGATTTTGTGAGATTGAAAGGCCCTTTGGGTTTGAACCCGGACCAGAATTTACTTTAGAAACATTTCAGAGATACGCAGATGAATTTAAGGCCAGATACTTCAGAAAGAATGAGAATATATCTAATATGGGAGGTAACACAACAATGGCAAAAGGATGGGAGCCTTCTGTGGAGAACATAGAGGGTGAATATTGGCGAATGGTGGAGAGACCTACTGAAGAAATTGAGGTGCTCTATGGAGCTGACCTGGAAACTGGGGTTTTTGGGAGTGGTTTTCCCAGAAAGCTTAGTGAAGTTGGTTCTGATTCACACAAAGAGTACGTAAATTCCGGCTGGAATTTAAATAACTTTGCTAGGCTTCCTGGATCTCTACTTTCATATGAAAGCAGCAATATATCTGGTGTCCTTGTGCCCTGGTTGTATATAGGAATGTGCTTTTCTTCCTTTTGTTGGCATGTGGAGGATCATCATTTATATTCATTGAATTACATGCATTGGGGTGCTCCAAAAATGTGGTATGGTGTCCCTGGCAAAGATGCTTGCAAATTGGAAGAGGCCATGAGAAAGCATTTACCGGACCTTTTTAAAGAGCAACCTGATTTGCTTCATAAGTTGGTCACTCAGCTTTCTCCTTCTATCCTCAAGTCTGAAGGAGTACCTGTCTATAGGTGTGTCCAGAATGCTGGAGAGTTTGTTCTGACATTCCCTCGAGCTTATCATTCTGGCTTCAATTGTGGCTTCAACTGTGCAGAGGCTGTAAATGTAGCTCCAGTTGACTGGCTGCCCCATGGGCAGATTGCCATTGAGCTATACCGGGAGCAAGGACGTAAGACTTCCATATCTCATGATAAATTGTTGCTTGGGGCTGCTAGGGAAGCAGTACGAGCACTGTGGGAGCTTAATCTGCTGAAAAAGAATACTTCAGATAATCTAGGATGGAAAGATGTCTGTGGAAAAGACGGTGTTCTAGCAAAAGCACTCAAGACACGTGTTGAGATGGAACAAGTAAGGAGGAAATTTCTCTGCAGTTCTTCACAGGCATTGAAAATGGAGAGCAGTTTTGATGCCACAAGTGAAAGGGAATGCAGTGTTTGCTATTTTGATCTACACTTATCTGCAGCTGGTTGCCATTGTTCCTCAGACCGATATGCTTGCTTGGATCATGCAAAGCAGTTATGTTCATGTGCATTGGATTCCAAATTCTTCCTCTTCCGTTATGATATTAGTGAATTGCTTATCCTTGTTGAGGCATTGGAAGGAAAATTAAGTGCAGTATACAGATGGGCAAAATTAGATCTTGGGCTGGCGCTAACTTCTATATCAAAGGACAAAAGCCAATGTGGCAACTTGATTCAGTCTTCAAAGGAAACAATGCTTCACAAGTTGAGATTAGATTCGTCAGATCTGTCTGGTTCTTCTTGTGGCACCACGCTTAAAGAGATGACATTGCATCCGTCAGTTGTTTCTATTGAAGATTCTCATTTGATAGATGTCCCAATAGAGAATCTTATGACTGCCGCAAAAGGCATTGATCAGGGTTTTATAAAATTAAGAAAATCAACAGAAGAGGCAATTCCCTTTGGTTATTCAAAAGAACTGTCTACATCTAATGGCTGGACAACCCCTTGTGAGATGACTAGTCATGAGAGATATTCTGAGAAAGAATCAACTATTTGCAAATCTGCTGTCGGGAATCCTGTTCGTCAGTTGCCTGTAGGAGACACTTCATATTCTATACCTCTTCCTTTAGCTGAACATGGACCTAAGAAAACTCCTTGTGGGCACGATAATGTTATACTTCTTAGTGATGACGAAACTGATGAACCTAAGATGACAGAAACAGATAACAAGAAGGAGCTTTCTCAAAGGCTTGTGGGTTCTTGTGATAATCTAAACCCATGTAATTATAGAGAAGATCCAGACAGGACTATCCCTGTCACAAATGCTGCTTTAAAGGTTGGGAATGATTTGCCTCATGAAAATATGAGTTCTCATTCAACTCAACATTTGCATGTGAAACGGGAACATGATATAATTAAGGGAGCAGTTTTAGATTCTACTCCAGTAGTTTTTTCCTGCAATATAGGTTATGGTAGTGCAGAATCAGTCGGACAAATTCAGGCTTGCTCAACAGGAGAGAGTAGAGATCATTGTCTGGATTCTTCTGGGAGTTGTCCTCTGAATCCAGAGCATTCTGGGACTGTCAAGCCTAAGAACGAGGACAACCATGAGAAGATTGGAGTATGTATTGCAGATAATGCTAGAGCTGTTAATGGCAACCTGTCTTGCTGTCCAAACAATTTGGGAAGATACTATCGTCAGAAAGGTCCTCGTATAGCAAAGGTTGTCCGGCGCATCAACTGCAATGTTGAGCCTCTAGAATTTGGAATTGTGTTTTCTGGGAAGTCATGGTGCAACAGTCGGACTATATTTCCGAAGGGATTTAGAAGCCGTGTAAGATACATAAATGTCTTAGAGCCAACAAGTATGTGTTATTATATTTCAGAAATTCTTGATGCTGGACGTGATGGGCCTCTGTTTATGGTCTCCTTGGAACATCACCCAAGTGAGGTCTTCATTCATCTTTCTGCCGGTAGATGCTGGGAACTGGTGAGAGAGAGAGTGAATCTGGAGATCACAAAGCAACATAATCTGGGAAGAAAGGACCTACCACCTTTGCAGCCACCTGGCAGCATTGATGGCTTTGAAATGTTTGGGTTTTCTTCTCCTGCAATAGTGCAGGCTATCGAGGCATTGGATCAAAATCGTGTTTGTAAGGAATATTGGGATTCGCGGCCCTATTCACGGCCTCTAGGGCGAATTCAACAAGCTTCACAGCCCAAAGAAAATGGTGGAAGTGCGGATGGGCCATTCCAGGGGGGAAATGTTCAAGGGGCTCACAGAAATGAGGGGATGCCTGTTGGAATAGATGCAGTATTGAGGAGGCTGTTAAAAAAAGCCGATGCACAAGAATTGAACTCATTGCGCAGCATTCTTTGTGACAATAACAATACTGCAACTGAGGGCAGCCTAATTGTTCAACTTCTCAATGAAGAGATCAGAAGTCGTCCCAGATGA 3834 0.4241 MGTELTRTCVQEENDEFPSVPPGFESYTSSSLDRGEGIEKQNDKNITSFSVSTSVSNCKLHSIQAKTDVQASDTAKVPRSLGRRRWINHGRYDNSSEEDSDSERLDQNFSSVPCLPKGVIRGCPDCSNCQKVIARWRLEDACRPTLEDAPVFYPTEEEFQDPMKYIASICSRAEPYGICRIVPPSSWKPPCPLKGKTIWGDSKFATRVQRIDKLQNRYSMRKMSRIHFNTRQKRKRCPRMGLDNGSNRGPNAGFCEIERPFGFEPGPEFTLETFQRYADEFKARYFRKNENISNMGGNTTMAKGWEPSVENIEGEYWRMVERPTEEIEVLYGADLETGVFGSGFPRKLSEVGSDSHKEYVNSGWNLNNFARLPGSLLSYESSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDACKLEEAMRKHLPDLFKEQPDLLHKLVTQLSPSILKSEGVPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYREQGRKTSISHDKLLLGAAREAVRALWELNLLKKNTSDNLGWKDVCGKDGVLAKALKTRVEMEQVRRKFLCSSSQALKMESSFDATSERECSVCYFDLHLSAAGCHCSSDRYACLDHAKQLCSCALDSKFFLFRYDISELLILVEALEGKLSAVYRWAKLDLGLALTSISKDKSQCGNLIQSSKETMLHKLRLDSSDLSGSSCGTTLKEMTLHPSVVSIEDSHLIDVPIENLMTAAKGIDQGFIKLRKSTEEAIPFGYSKELSTSNGWTTPCEMTSHERYSEKESTICKSAVGNPVRQLPVGDTSYSIPLPLAEHGPKKTPCGHDNVILLSDDETDEPKMTETDNKKELSQRLVGSCDNLNPCNYREDPDRTIPVTNAALKVGNDLPHENMSSHSTQHLHVKREHDIIKGAVLDSTPVVFSCNIGYGSAESVGQIQACSTGESRDHCLDSSGSCPLNPEHSGTVKPKNEDNHEKIGVCIADNARAVNGNLSCCPNNLGRYYRQKGPRIAKVVRRINCNVEPLEFGIVFSGKSWCNSRTIFPKGFRSRVRYINVLEPTSMCYYISEILDAGRDGPLFMVSLEHHPSEVFIHLSAGRCWELVRERVNLEITKQHNLGRKDLPPLQPPGSIDGFEMFGFSSPAIVQAIEALDQNRVCKEYWDSRPYSRPLGRIQQASQPKENGGSADGPFQGGNVQGAHRNEGMPVGIDAVLRRLLKKADAQELNSLRSILCDNNNTATEGSLIVQLLNEEIRSRPR 1277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele2000102g0062 1277 Pfam JmjC domain, hydroxylase 391 507 IPR003347 -
Lele2000102g0062 1277 Pfam jmjN domain 150 183 IPR003349 -
Lele2000102g0062 1277 SMART cupin_9 361 524 IPR003347 -
Lele2000102g0062 1277 ProSiteProfiles FYR domain FYRN motif profile. 1034 1092 IPR003888 GO:0005634
Lele2000102g0062 1277 ProSiteProfiles JmjC domain profile. 361 524 IPR003347 -
Lele2000102g0062 1277 Pfam F/Y-rich N-terminus 1048 1089 IPR003888 GO:0005634
Lele2000102g0062 1277 Gene3D - 1042 1178 - -
Lele2000102g0062 1277 PANTHER LYSINE-SPECIFIC DEMETHYLASE 141 979 - -
Lele2000102g0062 1277 MobiDBLite consensus disorder prediction 12 40 - -
Lele2000102g0062 1277 MobiDBLite consensus disorder prediction 1195 1222 - -
Lele2000102g0062 1277 SMART JmjN_1 148 189 IPR003349 -
Lele2000102g0062 1277 SMART fyrc_3 1098 1192 IPR003889 GO:0005634
Lele2000102g0062 1277 FunFam Putative lysine-specific demethylase JMJ16 1040 1178 - -
Lele2000102g0062 1277 SMART fyrn_3 1048 1092 IPR003888 GO:0005634
Lele2000102g0062 1277 Gene3D Cupin 134 508 - -
Lele2000102g0062 1277 ProSiteProfiles JmjN domain profile. 149 190 IPR003349 -
Lele2000102g0062 1277 SUPERFAMILY Clavaminate synthase-like 268 551 - -
Lele2000102g0062 1277 ProSiteProfiles FYR domain FYRC motif profile. 1094 1184 IPR003889 GO:0005634
Lele2000102g0062 1277 Pfam C5HC2 zinc finger 614 663 IPR004198 -
Lele2000102g0062 1277 Pfam F/Y rich C-terminus 1096 1180 IPR003889 GO:0005634
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele2000102g0062 1 1275 JUMONJI Transcription Factor Family AT1G08620 53.215 0.0 1207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lele2000102g0062 JmjC 2.3e-46 CL0029