Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele2000102g0042 ATGGCAAAGACTGGCGTCTCTGAAAACGACTTAACTTTGCTTCCCCATGCAAAGGCTTTGAATTTGAAGCACAAACTGCGGGGTCTCGTCAATATTATCCTGGATTCCGATGATTTCCCTCTGGCCAGCCTTGACGAAGCTATTACAACTCTTTCTGCTCTCAAGGATTTGAAATGTAAATCCACCGGCTTCTTCCCTCAGAAACTCCATCATTTGTCTATTCCCCCGGAATTTCGATGCCCCATATCTCTAGAGCTAATGAGTGATCCTGTTATCCTGGCCACGGGACAGACTTATGATCGGCCTTTTATCCAAAGATGGTTAAATGAAAGCCGCAGGACCTGCCCTCAAACACAGCAAGTCCTTTCTCACTCCATCCTTACTCCAAATCATCTGGTCCGTGACATGATTTCACATTGGTGCAAGGAGAACGGGGTTGAGTTGCCTAAGCCTATTCGGGACATTGATGAAGAAGTAATAACTGGTGCAGACAGAAGCCACTTAAATTCATTGCTCAAGAAGTTGTCAATGTCTATTTCTGATCAGAAAGAAGCTGCAAAAGAGCTCCGGCTATTAACAAAGCGAATGCCCTCATTTCGAATCCTTTTTAACGAGTCCAGTGATGTGATATTACAGTTGCTCAGTCCATTGTCACCTGGTACGGCTTATATCCCTCCTGACCTTCACGAGGACTTGATCACTACTGTTCTAAATCTATCAATTCATGATGACAATAAGAAAATGTTTGCTGAGAATCCCACGGACCACGGTCATCCCTCTGCTATTTTCACATTATCGAGCAGCATTGGAAATTCTGGGGCCATCAAACATTTAATTGAGCTTTTGGAGGAGGGACATCCATTGGCCATGAAAGATGCTGCCTCTGCGATATTCAACCTATGTTTGGCGCATGAAAATAAAGGAAGGACTGTTCGAGAAGGAGCTGTCCCGGTTATCCTGAACAAGATCATGGACCGTGTTCTAGTCGATGAGTTGCTGGCCATTCTAGCACTCCTATCTAGCCATCCAAAGGCTATTGAAGAAATGAGCGATCTTGGCGGGGTCCCCTTGTTGCTCAGTATCATACGAGAGAGCACGTCCGAAAGCTGCAAGGAAAATTGTGTCGCAATCCTACACACGATCTGTCTTACTGATAGAACAAAATGGAAGGAAATTAGAGAAGAAGAAAAAGCCAAGGGCACACTTTCGGAACTCGCACAATGTGGGACTTCAAGGGCCAAAAGGAAGGCTAACGGGATTCTTGAGAGGCTCAACAGATCCGCCACCTTAACACACACGGCCTAG 1305 0.4544 MAKTGVSENDLTLLPHAKALNLKHKLRGLVNIILDSDDFPLASLDEAITTLSALKDLKCKSTGFFPQKLHHLSIPPEFRCPISLELMSDPVILATGQTYDRPFIQRWLNESRRTCPQTQQVLSHSILTPNHLVRDMISHWCKENGVELPKPIRDIDEEVITGADRSHLNSLLKKLSMSISDQKEAAKELRLLTKRMPSFRILFNESSDVILQLLSPLSPGTAYIPPDLHEDLITTVLNLSIHDDNKKMFAENPTDHGHPSAIFTLSSSIGNSGAIKHLIELLEEGHPLAMKDAASAIFNLCLAHENKGRTVREGAVPVILNKIMDRVLVDELLAILALLSSHPKAIEEMSDLGGVPLLLSIIRESTSESCKENCVAILHTICLTDRTKWKEIREEEKAKGTLSELAQCGTSRAKRKANGILERLNRSATLTHTA 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele2000102g0042 434 PANTHER U BOX DOMAIN-CONTAINING 36 424 - -
Lele2000102g0042 434 Pfam U-box domain 74 144 IPR003613 GO:0004842|GO:0016567
Lele2000102g0042 434 Gene3D - 148 429 IPR011989 -
Lele2000102g0042 434 SMART Ubox_2 77 140 IPR003613 GO:0004842|GO:0016567
Lele2000102g0042 434 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 273 315 IPR000225 GO:0005515
Lele2000102g0042 434 ProSiteProfiles U-box domain profile. 73 147 IPR003613 GO:0004842|GO:0016567
Lele2000102g0042 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 147 IPR013083 -
Lele2000102g0042 434 FunFam RING-type E3 ubiquitin transferase 329 430 - -
Lele2000102g0042 434 CDD RING-Ubox_PUB 78 120 IPR045210 -
Lele2000102g0042 434 FunFam RING-type E3 ubiquitin transferase 73 147 - -
Lele2000102g0042 434 SUPERFAMILY ARM repeat 170 424 IPR016024 -
Lele2000102g0042 434 SUPERFAMILY RING/U-box 69 151 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele2000102g0042 136 434 U-box Gene Family AT3G07360 53.659 8.93e-104 309