Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele2000093g0083 ATGAGGTCTATCTTTTGTGGAAACTTTGAGTATGATGCTCGGCAGTCTGATCTGGAGCGGCTGTTTAAAAGATATGGGAAGGTTGATAGGGTGGATATGAAGTCCGGGTTTGCCTTCATCTATATGGAAGATGAGAGAGATGCTGAGGATGCAATTCGTGCACTTGATCGGATAGAATTTGGTCGAAAGGGACACAGACTTCGTGTGGAATGGACAAAAAATGAACGTGGCATTAGAAGGCCTGTTACTGGTAGTTCGAGAAGATCTTCAGCAAATTCAAGGCCATCAAAAACTTTATTTGTTATTAATTTTGATACATATCATACCAGGACTAGGGATTTGGAGAGGCACTTTGAGCCATATGGCAAGATAGTTAGTGTGAGGATTAGAAGGAATTTTGCATTTGTCCAGTATGACTCATATGAAGATGCCATCAAAGCATTGGAAGCTACAAATATGAGCAAGTTACTGGATCGAGTTATCACAGTTGAATTCGCTGCAGAGAATGATGATGATAAGAGGAATGCATATAGTCCTGATAGAAGTCGTGGTCATCCACGTGATGTAAGCTATGATAGAAGGCGATCGCCCAGTCCTTATCGCCGAGAAAGAGGCAGCCCTGATTATGGCCGTGGCTCTAGCCCATATGGGAGAGAGAAGAGCAGCTCTGATTATGGCCATGGCTCTAGCCCATATAGGACAGAGAAGAGCAGCCCTGCTTATGGGCGTGGCTCTAGCCCATATGGGAGAGAGAAGAGCAGCCCTGACTATGGCCATGGCCACAGTCGAAGTTCCCAACAGATTGAGAGAGGTAGCCCTCAACCTGATTATGACCACAGGAGCCGTAGTCCATATGGAAGAGAGAGGGATGCTTCTGACCCTGTTCGTGGCTCTAGCCATAGTCCTGATCATAAAGAACAAGCTAGAACCAACCATGGCGATTCTCACTCCCAAAGTCCTAATGGAAGCGAGAGGGTAAGCCCTCAAAATGGTGGTTCCGACCACAGTCCTTCCTATAGGAAGAGGGTTAGTCCTGAAAATGGTCATGGCTCTATAAGTAGTCCTGACGCAAGAGGTGATTCTAGTCCTAACTATGGCGAAGAAGATCACCTAAATTCCATGCCTGAGCCAAAGGACAATGCTAACCATGATGATGCTCCTGGAAGTCCCAGGATTGAAACAGACCGCAGCCATTCTCCTGCTGCTGAAGAATGA 1215 0.4617 MRSIFCGNFEYDARQSDLERLFKRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRIEFGRKGHRLRVEWTKNERGIRRPVTGSSRRSSANSRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYDSYEDAIKALEATNMSKLLDRVITVEFAAENDDDKRNAYSPDRSRGHPRDVSYDRRRSPSPYRRERGSPDYGRGSSPYGREKSSSDYGHGSSPYRTEKSSPAYGRGSSPYGREKSSPDYGHGHSRSSQQIERGSPQPDYDHRSRSPYGRERDASDPVRGSSHSPDHKEQARTNHGDSHSQSPNGSERVSPQNGGSDHSPSYRKRVSPENGHGSISSPDARGDSSPNYGEEDHLNSMPEPKDNANHDDAPGSPRIETDRSHSPAAEE 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele2000093g0083 404 SUPERFAMILY RNA-binding domain, RBD 2 172 IPR035979 GO:0003676
Lele2000093g0083 404 FunFam Serine/arginine-rich splicing factor RS31 1 86 - -
Lele2000093g0083 404 Gene3D - 84 179 IPR012677 -
Lele2000093g0083 404 Gene3D - 1 81 IPR012677 -
Lele2000093g0083 404 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 161 IPR000504 GO:0003723
Lele2000093g0083 404 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Lele2000093g0083 404 MobiDBLite consensus disorder prediction 172 208 - -
Lele2000093g0083 404 MobiDBLite consensus disorder prediction 273 312 - -
Lele2000093g0083 404 MobiDBLite consensus disorder prediction 371 404 - -
Lele2000093g0083 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 168 IPR000504 GO:0003723
Lele2000093g0083 404 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 98 341 - -
Lele2000093g0083 404 MobiDBLite consensus disorder prediction 313 337 - -
Lele2000093g0083 404 SMART rrm1_1 3 70 IPR000504 GO:0003723
Lele2000093g0083 404 SMART rrm1_1 98 164 IPR000504 GO:0003723
Lele2000093g0083 404 MobiDBLite consensus disorder prediction 172 404 - -
Lele2000093g0083 404 CDD RRM1_AtRSp31_like 2 73 - -
Lele2000093g0083 404 MobiDBLite consensus disorder prediction 216 241 - -
Lele2000093g0083 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele2000093g0083 3 163 Eukaryotic Initiation Factors Gene Family AT4G34110 25.000 3.81e-07 50.4