Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele2000093g0081 ATGGAGTCCCCCTCCCTCAGCCACTTTGCTCGATTTAGCCGACAATGGGAACTTCTTTTGATTCAGAAGAAGCAGTTTGGTCCTGTTCCTTCTTGGAGGTCCGAATTCGTGGAGCCTGAGGCGATCTGGTTAAACGGAACTACTCACATTTCTAAGGAATCGGCCATGGAGGTCGAGGTGCGAGCAGTGAAGCCAGCTAACGTGGCTGTCGAGCTATGGTTCATTTCCAGATATGGGACTGGGTTTTTTGGCGCTGTTGGACGCAGCATAATCTCGGGTGGTCAAACTGCCTTAGCATTACGGTTACTGCTGGTTGCTTTTTCATCAAAGATCTCTTCTGATGTTGACCGCCCTTTTGGTGATGAGTTCCGTGCTGCTCGAGAAGCATCTGAAGAAGTTGGTGAACAAATATTTTTGGGAGATCGGCCAATTGAAATAACTTACCTGGCATGGTCATTGAAGAGGAGCAAAGCGGTGAATAAGTGTAAAACGGTGGTGGGTGTAATAGGAAAGGGGCATCAACGGTGTAGGGTCTCCCCAGCTTCAAGCGTAATTGCAACTGCAACAAGTGGTCATGAAGCTTTGAAAACTCTGAGGGAATTCAGAGGCTTCTTCGACCTTGTTATCACCGATCTCAACATGCGAGGAATGAATGGATTTGAGCTCCAAAAGCGCGTCAAAAGCGAATTCCATCTCCCAGTCATCATTATGTCTGCAGATAGGAGGAAGAGTGTGATGTCGAAGAGTTTAGTGCAAGGAGCAGCATTTTGCTTAGTGAAACCAGTTCGAAGGGAGGACTTGAGAGATGTGTGGCAGTATGCTGTGGCTGGGAGGAGAGAGAAACTGAGAGTTGAGAATGGCAGAATAGTATCAATAAGAGACGAAAAAGAAGAAGGAGACTCAGCATCATCACCAGGTGGCATTAATAATATAGCCTCTACACAGAATTCAACATCGCCTAATAAAAAGCAAAGGAAGAAGTATTGCAAGAGAAATCGTAGCGAGGTGGTTGAGCATGAAGGACTCGTATTCAGTGGTCCAAAGAGGTCCAAGATTTGCTGGACTGTTGAACTTCACAGTCGCTTCTTGTTGGCCTTAAGGCACCTTGGCATGGACAAGGCTGTTCCAACCAAGATTCTTGAGATCATGAACGTGCCAGGTTTAACCAGAGAAAATGTTGCCAGTCATTTGCAGAAGTATCGTTTGTTTCTGAAGAGAATTGCCGAGAAAGGAATCCTTGAGGGATTACCTGAGAGAGCGTTGAGGTCAAGGCCTCAGAGTCCTCAAACCAGACTGGTCCCACCACCAAACCACTATGGTGGGACCAATCATACTACTTACGGAAACTTCCATCAACCCTATTATCATCATCTTCATCGTCCTCTCGTAAATGGAGGAGGGTTCATCACTTCTGCAAATGCCCTCACTGCAAATAGTGGTTGGATGAGTAACTATCCCAATCCCTCACTGGTGGGGAACAACAGAAGCTTCGACTATGGACAAACTAATTATTATGGAAGCTCTGCCCTGCAACGATGTCCTGGGACGTATAATAACCACCATAGAAAACAACTGAATTACAACAACTACAAAAATAATAACCGTGGGATGATATTGCCTTATTATGGAAGCTATGGCTTGCCACCAAGTCCTGGTACTTATTATAATAACCACTATGGAACTCAACTGAACAACAACAGCAACACTTCTCTTACAGTTGATGCTTTGAGTCGAGTTCAGAATGTTGGTTATACAGGTCATAACAGTAATGGAAGTGCTGCTGCAAATAATGCAATTGTGCCTGTCTCATCATCCTCAGTTGAACCAAACCAGCCAAACATATCTGCTGGTCTTCCTTCTTTGCCTCAGCAGTCAATTAATGGTATTAGGAATGCTGTCACTTCTGTGAATCAGCGGGAAGTTGGTCAAATGGATGATTTTAATGAACTTTTCCTCATGCTAGACGACATGGTTTCTCTTGACAAGAATGCAGAGAGCCCTCGTGCTGGTGAACGTTCAACTTCTGACATTCTTAGCTCCTTCAATATTGAAGACTACATTGAGCTGTTGGAGGCAGATGGGGATCATGTGAGCGCTCAAACATATGAAAGAAGCGTTGATGTTCTGCCTGACAATTCCTCATCTTGCACGAATGAAAACCCTAATAATTTGGATTGGGACATGGATCTCATTGAAACGTTGTTCGATGCTGCAGATCTCAGCCAGAAGTGA 2232 0.4485 MESPSLSHFARFSRQWELLLIQKKQFGPVPSWRSEFVEPEAIWLNGTTHISKESAMEVEVRAVKPANVAVELWFISRYGTGFFGAVGRSIISGGQTALALRLLLVAFSSKISSDVDRPFGDEFRAAREASEEVGEQIFLGDRPIEITYLAWSLKRSKAVNKCKTVVGVIGKGHQRCRVSPASSVIATATSGHEALKTLREFRGFFDLVITDLNMRGMNGFELQKRVKSEFHLPVIIMSADRRKSVMSKSLVQGAAFCLVKPVRREDLRDVWQYAVAGRREKLRVENGRIVSIRDEKEEGDSASSPGGINNIASTQNSTSPNKKQRKKYCKRNRSEVVEHEGLVFSGPKRSKICWTVELHSRFLLALRHLGMDKAVPTKILEIMNVPGLTRENVASHLQKYRLFLKRIAEKGILEGLPERALRSRPQSPQTRLVPPPNHYGGTNHTTYGNFHQPYYHHLHRPLVNGGGFITSANALTANSGWMSNYPNPSLVGNNRSFDYGQTNYYGSSALQRCPGTYNNHHRKQLNYNNYKNNNRGMILPYYGSYGLPPSPGTYYNNHYGTQLNNNSNTSLTVDALSRVQNVGYTGHNSNGSAAANNAIVPVSSSSVEPNQPNISAGLPSLPQQSINGIRNAVTSVNQREVGQMDDFNELFLMLDDMVSLDKNAESPRAGERSTSDILSSFNIEDYIELLEADGDHVSAQTYERSVDVLPDNSSSCTNENPNNLDWDMDLIETLFDAADLSQK 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele2000093g0081 743 SMART REC_2 154 271 IPR001789 GO:0000160
Lele2000093g0081 743 ProSiteProfiles Response regulatory domain profile. 155 275 IPR001789 GO:0000160
Lele2000093g0081 743 SUPERFAMILY CheY-like 184 280 IPR011006 -
Lele2000093g0081 743 MobiDBLite consensus disorder prediction 303 322 - -
Lele2000093g0081 743 CDD TraB_PrgY-like 42 173 IPR046345 -
Lele2000093g0081 743 Gene3D - 175 338 - -
Lele2000093g0081 743 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 350 403 IPR006447 GO:0003677
Lele2000093g0081 743 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 346 405 IPR017930 -
Lele2000093g0081 743 Gene3D - 347 408 - -
Lele2000093g0081 743 Pfam Response regulator receiver domain 183 269 IPR001789 GO:0000160
Lele2000093g0081 743 MobiDBLite consensus disorder prediction 294 331 - -
Lele2000093g0081 743 FunFam Two-component response regulator 345 408 - -
Lele2000093g0081 743 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 293 610 IPR044841 GO:0003700|GO:0006355
Lele2000093g0081 743 SUPERFAMILY Homeodomain-like 347 406 IPR009057 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele2000093g0081 194 408 Response Regulator Gene Family AT3G16857 42.667 1.53e-43 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lele2000093g0081 Response_reg 3.2e-17 CL0304