Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele2000093g0043 ATGGAGACTCATCAAAGCTTATTTATACCTTCCAATTCCATGAAAGATAAAGAATTTTACAAGAAATTCTTGATGAGGCAAACACTGGGGACTGGGGTGTTAAAAGTGGCAGGCACTAGGCAGGCACAAGCAGCTGGCTGGGGAGTCCGGATTAACCACCAAGGTCTGTACTTCAGACCTGGGATTCACCAGCTTTGCTTAAGGGCTCGAAAATGTTGCACTGGAAAAGCGAATTTACCCATCCAGTCTCCTTCACATCTCTCAGCTCTTTTTCCTTCACAACACCCAATTTTTCCCGGAAAATCGAGACCCCAGAAAATGTCAGATTCCGAGGACGAAAATCCCGAACTTACTCCCCAATCAAAGCCCAACGCAGAGGAACCTGGCTCTGTAATGGATTTCGACCTCGACCTAGAGAGTTCTTGGCCTTTAGATCAGATAACTTTCGCTTCTAACCCTATGTCCCCTTTTCTGATTTCCACCACATCGGAGCAACCTTCTTCTCCTCTCTGGCTTTTCTCAGACGTTGACGATGATAGGCAAGTTAAACTTGCCGCTTCTGCCCTCTCCGATGTCCATCGATTGCTCTCATGCAATTCGAATTCAGTAGCTGAAAAACCAGCGGAGAGTGAGGAGACGAAAAAACCCCCTTCTCCCTTTGTTGCCCTGCCTCCATTACCATTAGAAACTCCAGATGGGTATTGTTTGATTAAAGAAAGGATGACACAAGCTCTAAGGTACTTCAAAGAATTGGCTGACCAGCATGTTCTGGCTCAGGTTTGGGCACCTGTAAGGATGGGGAACCAGTATGTCCTTACAACTTCAGGGCAACCCTTTGTTCTTGATCCTCATAGTAATGGACTCTATCAGTATAGAACAGTCTCTCTGATGTACATGTTTTCAGCGAATGGAGAGAATGATGGAACCCTCGGGCTTCCCGGTCGTGTTTTTCATCAGAAGTTGCCGGAATGGTCTCCCAATGTTCAATATTATTCTAATAAAGAGTATCCCCGCCGAAATCATGCTCAACATTACAATGTTCGTGGAACCTTGGCTTTGCCTGTGTTTGAACCTTCGGGGAAGTCATGTGTTGGTGTGCTGGAGTTGATAATGACTTCTCAGAAGATTAACTATGCCCCTGAGGTTGATAAAGTCTGCAAAGCTCTTGAGGCAGTAAATTTGAAGAGTTCGGAAATTTTGGAACATCCATTCACTCAGATTTGTAATGAAAGCCGTCAGAATGCATTAGCAGAGATCTTGGAGATATTGACAGTGGTCTGTGAAACTCATAAATTACCTCTGGCGCAAACATGGGTTCCTTGTAGGCATCGGAGTGTTCTGGCCAATGGTGGTGGCCTGAAGAAGTGCTGCTCCAGCTTTGATGGTAGTTGCATTGGGCAAGTTTGCATGTCTACTACTGATGTTGCATTCTATGTCATAGATGCTCATATGTGGGGTTTCCATGAAGCCTGTGCTGAGCACCACCTACAACAAGGACAAGGGGTTGCTGGGAAGGCATTTTTGTCCAGCAATATGTGCTTCTGTGCGAACATTACCCGTTTCTGCAAAACTGAGTATCCTTTGGTACATTATGCTCTCATGTTTGGCTTAACCAGCTGTTTTGCTGTCTGTTTGCAAAGCTCTTATACAGGACTTGATGATTATATATTGGAGTTTTTTCTGCCTCCTAAAGTCACAGACTTAAATGAACAAAAGACTATGTTGGGATCTATATTAGCAACAATGAAACAGCATTTCCATAGTCTTAAGATAGCTGCTGGTCTTGAACTCGAGGAGGAATGTTCAGTTGAAATCATTGAGGCAACAAGTGAAAGAGTTTATTCAAGACTCGAATCTATTATGATTACCCAACCTACTAAATTGCCACTGGGATCTGATGCCTTGCCAAATATGGGGGAGATTTTACCACTGGATACATCAGAGCAGCGAATGGTATTTTTAAACGATATAAATGGTGGTCGGGGTCTTGCTGATAGAGCTGGTGAAACCTCTGATAAGATATTCCCCTTGGAGACTAAAAACACAAAGAAACCCTCAGAGAGAAAACGGGGAAAAACGGAGAAATCAATTAGTCTTGAAGTTTTGCGAAACTATTTTGCTGGGAGTCTTAAAGATGCTGCAAAGAGTCTTGGTGTTTGCCCCACTACAATGAAGCGCATCTGTAGGCAGCATGGGATATCCCGTTGGCCATCACGGAAGATTAACAAGGTTAATCATTCCCTGTCCAAGCTCAAGCGGGTCATTGAATCCGTCCAAGGTGCTGAAGGAGCATTTGGTTTGAATTCTCTCAGTACCTGTTCAATTCCCATGGCTGTTGGCTCCTTTCCTGAGCCTTCAAACAAGTTCAACCAACAAGCCTCGCTAAGCACTCAACTGGCAGAACCACAGATGAAAGAGAGCGAGTTGGATGCCTCCAAAGTATCAGATTCAAACAGGCAAACTGAGGCAGAACACCAGTTGGTAGGAGGAAGGGTACAAAGTCCTGAGAAAAGTGGGTCCAGTCAGGAGTTTGGTAAATGCCCTAAAGGACCCAGAACGGGCAGTCTCTCAAGCGAAGTTAGGGCAAACCCTACTTCTCACTGTTCCTGTCATGGTAGTCCCCCAATCGAAAGTTCACCTCCAAAAGAAATATTCATTACAACCAATACCGATCAGTATGTTGTGGCTGGGGGATCGCCCGAGTTGCCGCCAACAGGTAAACTGAATAGTCCACCTGGGTATGCCATGCCCAACTTTGCGCCCACAGAACTTCAGGAGTCATTTGGAGGAATGCTGATAGAGGATGCAGGTAGTTCCAAAGACTTGAGAAATTTGTGCCCCGCAGCAGCAGCAGATGCCAATGTAGAGGACCAGTTACCAGAAGCTTGTGCTGCTAATCCTCCAGGCTCTGACTTGGGTCCTAAGCAATGCGCCAATACTCTTGGCGACACGATGACGCCTTTTGCAGCTCGGAGAGAAATGAAGACTGTGACTACAAAAGCAACATACAGAGAAGATATCATACGGTTTCGTATCTCCTTAACCTCGGGCATCGTGGATCTGAAAGAAGAAGTTGCCAAAAGGCTGAAACTGGAGGTGGGTACTTTCGATATCAAGTACCTGGATGATGATCAAGAATGGGTTTTGATAGTCTGTGATGCAGACCTCCAGGAGTGCATGGACATCTCTAGATCATCCGGCACTAACATGATCAGACTTTTGGTACATGATATAACATCCAATCTCGGAAGTTCCTGTGAGAGCTCGGGGGAGTGA 3276 0.453 METHQSLFIPSNSMKDKEFYKKFLMRQTLGTGVLKVAGTRQAQAAGWGVRINHQGLYFRPGIHQLCLRARKCCTGKANLPIQSPSHLSALFPSQHPIFPGKSRPQKMSDSEDENPELTPQSKPNAEEPGSVMDFDLDLESSWPLDQITFASNPMSPFLISTTSEQPSSPLWLFSDVDDDRQVKLAASALSDVHRLLSCNSNSVAEKPAESEETKKPPSPFVALPPLPLETPDGYCLIKERMTQALRYFKELADQHVLAQVWAPVRMGNQYVLTTSGQPFVLDPHSNGLYQYRTVSLMYMFSANGENDGTLGLPGRVFHQKLPEWSPNVQYYSNKEYPRRNHAQHYNVRGTLALPVFEPSGKSCVGVLELIMTSQKINYAPEVDKVCKALEAVNLKSSEILEHPFTQICNESRQNALAEILEILTVVCETHKLPLAQTWVPCRHRSVLANGGGLKKCCSSFDGSCIGQVCMSTTDVAFYVIDAHMWGFHEACAEHHLQQGQGVAGKAFLSSNMCFCANITRFCKTEYPLVHYALMFGLTSCFAVCLQSSYTGLDDYILEFFLPPKVTDLNEQKTMLGSILATMKQHFHSLKIAAGLELEEECSVEIIEATSERVYSRLESIMITQPTKLPLGSDALPNMGEILPLDTSEQRMVFLNDINGGRGLADRAGETSDKIFPLETKNTKKPSERKRGKTEKSISLEVLRNYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNHSLSKLKRVIESVQGAEGAFGLNSLSTCSIPMAVGSFPEPSNKFNQQASLSTQLAEPQMKESELDASKVSDSNRQTEAEHQLVGGRVQSPEKSGSSQEFGKCPKGPRTGSLSSEVRANPTSHCSCHGSPPIESSPPKEIFITTNTDQYVVAGGSPELPPTGKLNSPPGYAMPNFAPTELQESFGGMLIEDAGSSKDLRNLCPAAAADANVEDQLPEACAANPPGSDLGPKQCANTLGDTMTPFAARREMKTVTTKATYREDIIRFRISLTSGIVDLKEEVAKRLKLEVGTFDIKYLDDDQEWVLIVCDADLQECMDISRSSGTNMIRLLVHDITSNLGSSCESSGE 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele2000093g0043 1091 SUPERFAMILY CAD & PB1 domains 993 1081 - -
Lele2000093g0043 1091 Pfam RWP-RK domain 696 744 IPR003035 -
Lele2000093g0043 1091 MobiDBLite consensus disorder prediction 786 803 - -
Lele2000093g0043 1091 SMART PB1_new 996 1078 IPR000270 GO:0005515
Lele2000093g0043 1091 MobiDBLite consensus disorder prediction 201 223 - -
Lele2000093g0043 1091 PANTHER PROTEIN NLP8 163 1090 IPR045012 GO:0003700
Lele2000093g0043 1091 MobiDBLite consensus disorder prediction 786 876 - -
Lele2000093g0043 1091 MobiDBLite consensus disorder prediction 856 873 - -
Lele2000093g0043 1091 CDD PB1_NLP 997 1077 IPR034891 -
Lele2000093g0043 1091 MobiDBLite consensus disorder prediction 806 820 - -
Lele2000093g0043 1091 MobiDBLite consensus disorder prediction 92 131 - -
Lele2000093g0043 1091 FunFam RWP-RK domain-containing protein 993 1077 - -
Lele2000093g0043 1091 ProSiteProfiles PB1 domain profile. 996 1078 IPR000270 GO:0005515
Lele2000093g0043 1091 Pfam PB1 domain 996 1077 IPR000270 GO:0005515
Lele2000093g0043 1091 Gene3D - 993 1077 - -
Lele2000093g0043 1091 ProSiteProfiles RWP-RK domain profile. 683 764 IPR003035 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele2000093g0043 371 1091 NLP Transcription Factor Family AT4G24020 55.313 0.0 705
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lele2000093g0043 PB1 5.7e-19 CL0072