Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele2000093g0019 ATGGTCTCCAAAAACCCAAACACCCCTGACGGCATCTACTTGGATCCCCCTGGCATGGCACTTCCCGGCCTTGGTCCCTTCGCCTCCGTCACTGCCGCCGCCGCTGCCACGACTGCCTCGACTGCTAATTCATCGGACGACCCTTCCAAGAAGATCCGGAAACCGTACACTATAACTAAGTCCAGGGAGAGCTGGAGCGAACCCGAGCACGACAAATTCCTCGAAGCCCTGCAACTTTTTGACCGTGATTGGAAAAAGATTGAAGCATTTGTTGGATCAAAGACAGTTATACAGATACGTAGCCATGCACAGAAGTATTTTCTAAAAGTTCAGAAGAGTGGAGCAAATGAACATCTACCTCCACCCAGGCCAAAAAGAAAAGCTGCTCATCCATATCCTCAGAAAGCTTCCAAAAATGCTCTGGTTCACTCTCAAATATCAGGATCCTTTCAATCTTCGGCTCCTCTGGTTGAACCTGGATATATAATAAAGCCTGATTCCTCAGCAATGATCAAAACTCCAGTTCCTAATGCTTCAGTGTCTTCTTGGTCAACCAAGACCTTGCAGACGACCAATTTACTGCATGGGCCCAGAATGAAGAATAGTTGCAGCAGCAGTGAAAGCACTCAGAGAGCACGGCCAATTGGTGTTTCTACTGGTCAAGGGAATAATAACCATCCATTGAGAGGCAAGACTTTGATTATTCTGCCAGACTTTGCCCAAGTTTACAAGTTCATTGGCAGTGTATTTGACCCAAAAGCCACTGGGCATCTTCAGAAACTAAAAAAGATGGATCCTATAGATGTTGAGACGGTACTACTATTGATGAGAAACCTGTCTATTAATTTAGCAAGCCCAGATTTTGAGGATCATGTAAGTATTCAGTTCACTGATTTAGAAGGTTGCTCTCTTCTTGTGAGGTGGAATCAGGGACAATCTAGCTTTCTCAATGCAGAAAGACCCGGATGCAACAAGCAGGTGAAGAGTGTTATGCTTCAATGGAGGCCTGTACAGTTCCAAAGCTCTACAGTTTTTCTTGGACTAGTACAGTACCGGTTCTGTCAGTTTAGACCGAACTTAATAACATTGAAGTTTACTTGTGATTCTGCTTACAGAATTAGTTCTTCCCATTTTTTATATTTTCTCATACAATTCAAAGGAGTATGTTATGCGAAAAAGGATTATAATCTTGCAAAGTACCCAGAGATGGATGTGCCAACCTGCAGGACATACCTTAATCTGCCCTCAGAAATTGTGCCTGGTACATTGAAGAAAACTCCTAAACCAGTTGGCAGGCCATTCCGTGGTGGCCCCCTGGTGATCGCCCACGTGGTCCTCCTCGGTCTGGAGACCGCGATGGATACTGGTGGTGACAAAGGAGGAGCTCCGGCAGATTACCAGCATCATTTAGGGGTCCTGGTGCCAGGCCTGGTTTTGGACGAGGCGGTGAGGGTTTTGGCGCTTCCCCTGGTACCAGCATTTTATAGACTAACTATTTTAGCTCAAGTTCCCCTGCCAGGATGGCGTTCTCCACAGTTCCATTCCATAGTGTTTTTTTTGGGCTAA 1566 0.4585 MVSKNPNTPDGIYLDPPGMALPGLGPFASVTAAAAATTASTANSSDDPSKKIRKPYTITKSRESWSEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGANEHLPPPRPKRKAAHPYPQKASKNALVHSQISGSFQSSAPLVEPGYIIKPDSSAMIKTPVPNASVSSWSTKTLQTTNLLHGPRMKNSCSSSESTQRARPIGVSTGQGNNNHPLRGKTLIILPDFAQVYKFIGSVFDPKATGHLQKLKKMDPIDVETVLLLMRNLSINLASPDFEDHVSIQFTDLEGCSLLVRWNQGQSSFLNAERPGCNKQVKSVMLQWRPVQFQSSTVFLGLVQYRFCQFRPNLITLKFTCDSAYRISSSHFLYFLIQFKGVCYAKKDYNLAKYPEMDVPTCRTYLNLPSEIVPGTLKKTPKPVGRPFRGGPLVIAHVVLLGLETAMDTGGDKGGAPADYQHHLGVLVPGLVLDEAVRVLALPLVPAFYRLTILAQVPLPGWRSPQFHSIVFFLG 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele2000093g0019 521 MobiDBLite consensus disorder prediction 112 139 - -
Lele2000093g0019 521 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Lele2000093g0019 521 Gene3D - 65 112 - -
Lele2000093g0019 521 SMART sant 61 109 IPR001005 -
Lele2000093g0019 521 CDD SANT 64 107 IPR001005 -
Lele2000093g0019 521 FunFam protein REVEILLE 6 isoform X1 64 112 - -
Lele2000093g0019 521 ProSiteProfiles SANT domain profile. 60 111 IPR017884 -
Lele2000093g0019 521 PANTHER SWI/SNF COMPLEX-RELATED 32 284 - -
Lele2000093g0019 521 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 60 109 IPR006447 GO:0003677
Lele2000093g0019 521 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Lele2000093g0019 521 SUPERFAMILY Homeodomain-like 56 112 IPR009057 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele2000093g0019 408 467 Cytoplasmic Ribosomal Protein Gene Family AT5G41520 42.353 3.21e-09 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele2000093g0019 Myb_DNA-binding 2e-09 CL0123