Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele2000087g0160 ATGCAAAACAACAATAAGAGTAACAATAAGGTTTCTTCTGACAAACTAAAATCAGCACAGACCGCACAGCTTTTTTCGTACACCCTTATTTTAGGTTCTCTCCAAGAAAACATCATCCATCGTCCAGAACTAGAAAGCTCTCTGCTTTTGGTCTCTCTTCTTCAAACCCTAATCCACTGTCCTGATATTGCATATCAGAGCATCTACTGTCGGAGAAGAATGGATCACCAAGGAGGGTATAGCTCAAACCCGTCTATGGGGGTTGTTGGTAGCGAAGCTCAGTTGCCTTATGGTTCTAATCCTTACCAGCCGAGCCAAATATCGGGGGCACCCGGTTCTGTTGTTACATCGGTTGGGACCATTCAAACCACTGGTCAGCCTGCCGGAGCTCAGCTAGGACAACATCAACTCGCTTATCAGCATATTCATCAGCAACAGCAGCAGCAACTTCAGCAACAACTCCAGACCTTTTGGGCAAATCAATACCAAGAAATTGAGAGGGTAAATGATTTCAGGAACCACAGCCTTCCTTTGGCAAGGATCAAGAAGATTATGAAAGCCGATGAGGATGTTAGGATGATATCAGCTGAGGCACCTGTTATATTTGCAAGGGCGTGCGAAATGTTCATATTAGAGTTGACATTGCGTTCTTGGAACCACACCGAGGAAAACAAAAGGAGAACACTCCAAAAGAATGATATCGCAGCAGCAATCACAAGGACTGACATCTTTGATTTTTTGGTTGATATCGTGCCCAGGGAGGACTTGAAAGATGAAGTGCTTGCATCAATCCCTAGAGGAACCATGCCGGTTGCAGGGCCTGCTGATGCTCTTCCTTATGGCTATATGCCACCACAGCATGCTCCTCAAGTTGGGGGCGCTGCTGGGTTCATCATGGGTAGGCCTGTAATGGACCCGAGCATGTATCCTCGACAATCGCACCCCTACATGTCACAACAAATGTGGCCACAACCACAAGAGGGGCAACAATCATCTCCAGATCATTAG 1008 0.4633 MQNNNKSNNKVSSDKLKSAQTAQLFSYTLILGSLQENIIHRPELESSLLLVSLLQTLIHCPDIAYQSIYCRRRMDHQGGYSSNPSMGVVGSEAQLPYGSNPYQPSQISGAPGSVVTSVGTIQTTGQPAGAQLGQHQLAYQHIHQQQQQQLQQQLQTFWANQYQEIERVNDFRNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADALPYGYMPPQHAPQVGGAAGFIMGRPVMDPSMYPRQSHPYMSQQMWPQPQEGQQSSPDH 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele2000087g0160 335 FunFam Nuclear transcription factor Y subunit gamma 140 253 - -
Lele2000087g0160 335 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 136 276 - -
Lele2000087g0160 335 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 175 238 IPR003958 -
Lele2000087g0160 335 MobiDBLite consensus disorder prediction 308 335 - -
Lele2000087g0160 335 SUPERFAMILY Histone-fold 144 247 IPR009072 GO:0046982
Lele2000087g0160 335 Gene3D Histone, subunit A 137 253 IPR009072 GO:0046982
Lele2000087g0160 335 MobiDBLite consensus disorder prediction 312 335 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele2000087g0160 90 322 CCAAT-HAP5 Transcription Factor Family AT1G08970 62.821 1.52e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lele2000087g0160 CBFD_NFYB_HMF 8.9e-18 CL0012