Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele2000087g0113 ATGAGGTTTAAACCTAAGGTAATCTCTAGACCGCAACACGTGGTTATTTTTGTATATGCCGAAACTACCCCGACAGAAACAACTGCTCTCTTCGGGCGATTGCTGAGGTTGTCAATGGGTCCTGGATGCTTAGTTATTGCGAAGGATGACAATGGGATTTCAAAGGGTTTTGGCTTCGTGAACTATGATAACCCAGATGATGCCAGACTGGCAATAGAAGGAATGAATGGATCACAACTTGGTTCAAAGATTCTATACGTAGCCAGAGCACAAAAGAAGGCCGAACGTGAGCTTATTTTGCACCATCAGTTTGAGGAGAAACGCAAGGAACAAATCTTAAAATACAAGAGGCAGAAGATTCATGACGTAAGTGATGAAGAACTACGGAATCTTTTTTTTCGTGCATGTGGCTCAATAACATCTGCAGTAGTTATGCGAGATGGCAAAGGTATAAGCAAGGGGTTTGGTTTCGTCTGCTTCTCTAACCCTGAGGAGGCTAATAAAGCTGTGAACACCTTTCATGGATGTATGTTTCATCCCAAACCATTACATGTTGCTATTGCTCAAAGAAAGGAGGATAGGCAAGCACAATTGCAGATTCAACATGCACAGCGAATGGCAGGACTATCTGGACCTTCAGTAGCTGTTATTCCTGGCGGATATTCTCCTTATTATTATGCAGCTACCGGGGCCGTTTCACGGGTTCCTTCTCGACCTAGCATAATGTATCAACCTTTGGGGTTGACACAGGGATGGAGGGCTAATAGCTTTGCACCTCCTACCAGACCATTTCAACAGCCACTAGTTCCTATGGTTTCCAATTCTACAAGGCAAAATAGGCAAAACAAAGACATGGAGCTACCTAGAGGACGAACCTTCAAGTATCGTCCTCCTCGTCATATTGGTACATATCTCTTCAGAGTTTGCTTCCCAGCAACTGCCGTTGCCGCTGCAATTCCACCGATCGCACCCACAATAGCAGCCGATCGCGGTGCTGTCGTCAGATTTCAGAAATTGGGTGCTGTAGCAAGAACCAGATCTCCAATGTCCTTTCTTGTTCCGATTGGTTGTGGTGTAGCTGAATGTGTGGCATGTGTTTCTGCTGTGATTTCGCTCTGGTCAGCTTTTGGTGTTAGTCGCAACCATGGGAAGATGTTGGATATTGCTACTTTCTTAGATCTGGAAATTTCAGTTTTTATGAAGAAGGATTATAAGCACTTGAAGGATAGAATATGA 1236 0.4417 MRFKPKVISRPQHVVIFVYAETTPTETTALFGRLLRLSMGPGCLVIAKDDNGISKGFGFVNYDNPDDARLAIEGMNGSQLGSKILYVARAQKKAERELILHHQFEEKRKEQILKYKRQKIHDVSDEELRNLFFRACGSITSAVVMRDGKGISKGFGFVCFSNPEEANKAVNTFHGCMFHPKPLHVAIAQRKEDRQAQLQIQHAQRMAGLSGPSVAVIPGGYSPYYYAATGAVSRVPSRPSIMYQPLGLTQGWRANSFAPPTRPFQQPLVPMVSNSTRQNRQNKDMELPRGRTFKYRPPRHIGTYLFRVCFPATAVAAAIPPIAPTIAADRGAVVRFQKLGAVARTRSPMSFLVPIGCGVAECVACVSAVISLWSAFGVSRNHGKMLDIATFLDLEISVFMKKDYKHLKDRI 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele2000087g0113 411 PANTHER OS02G0815200 PROTEIN 45 191 - -
Lele2000087g0113 411 Gene3D - 21 120 IPR012677 -
Lele2000087g0113 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Lele2000087g0113 411 SUPERFAMILY RNA-binding domain, RBD 122 210 IPR035979 GO:0003676
Lele2000087g0113 411 Gene3D - 121 207 IPR012677 -
Lele2000087g0113 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 92 IPR000504 GO:0003723
Lele2000087g0113 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 84 IPR000504 GO:0003723
Lele2000087g0113 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 182 IPR000504 GO:0003723
Lele2000087g0113 411 SUPERFAMILY RNA-binding domain, RBD 45 96 IPR035979 GO:0003676
Lele2000087g0113 411 SMART rrm1_1 15 88 IPR000504 GO:0003723
Lele2000087g0113 411 SMART rrm1_1 112 186 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele2000087g0113 20 290 Eukaryotic Initiation Factors Gene Family AT2G36660 46.786 1.21e-69 229