Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele2000087g0090 ATGGCGAGCCAGTTGGTCAAAGTGAAGAGGGGGACGCTAGAAGCATGCATGACATGCCCTCTCTGTCATAAACTGTTGAAGGATGCTACTACCATCTCTCTCTGCCTTCATACGTTCTGCAGGAAATGCATATACGAGAGATTCTCAGATGAGGAGGCAGATTGCTGTCCAGTATGCAATATTGATCTGGGCTGTCTTCCGGTGGAAAAACTGAGGCCAGATCACAATTTGCAAGATATTAGAGCCAAAATATTCCCTTTGAGACGAAGAAAGATAAAGGCCCCAGAGGTGATACCTTCAGTACCTCTGCCAGCGAAAAGGAAGGAAAGATCACTTTCATCATTGGTGATTTCTGCTCCCAAAGTTTCAATGCAGACTGGCTTCACAGGAAAGAGAACGAAAACTGCTACAAGAAAGGCTGCTGCTTTGCGTGGATGCAGTTTTTCTGTTCATGAGTCCATAAAGAAGAAAGAAGTCTATACTGAGGATAACCTAGATTCTTCCACAGCTGAGCCTTCTAAGAAGAGTAGGCCTAATGAGGATACAGAGAACAATGTGGAACTTCCAGAAGGGAAAGTTGATCTCTGGACACCCTTGAACTGTCTTGTTGAAGCAGCCAACAGGACAAAATCCTCAAAGTTAACTTCACAAGGCTTGTCTCTTGCCAAATCCGAGCCTCCAACTACTCCCAATGGTGGACTAAGTATGCCTGAAATTACAGCCAAATCAGAGCCATCTGCTGCTGTCCATAGTGAATTACGTATGCCTAAAACCAAAAACAAGGATAATGGACATAAAACAAAATTTGGAGACGACAAGGATGAAAATGTTGTGCCTCTGGGACAAGTGAGGCGGAGAAGGGTGCGTCCTTCTGGTCAGAAAAGAGCTGCAGCATCCGAGAGTTCTACCTCAGCCCAAGTTATGCTAGATGCAGCTGGCGGCAGGTGTAACAGAGAAAACTGTCCTATTTGGTTTTCATTGGTTGCTTCAGAAGACCAGAAAGTAGATGTTCCCTTGCCGCAGATTTCAGCATGCTACTTAAGAATCAAGGACAGTAGTGTGCCGGTCTCCTTTATTAAGAAGTACCTTGTTAAGAAGCTTAATCTTGCCAGCGAAGCTGAGGTCGAGATAATGTGCGGTGGTCGACCCGTGCTGCCATCTCTGCAACTGCATAACTTGGTTGATCTCTGGTTCAGGACTGCGTCTTCCTCTAAAAAGATTCCTGCTTCTGTTGGCTCCTCCGCCAAGGACTTCGTTATGGTTTTATCATATTCTCGAAAGCCCCTCCCTCCTTAG 1296 0.456 MASQLVKVKRGTLEACMTCPLCHKLLKDATTISLCLHTFCRKCIYERFSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPLRRRKIKAPEVIPSVPLPAKRKERSLSSLVISAPKVSMQTGFTGKRTKTATRKAAALRGCSFSVHESIKKKEVYTEDNLDSSTAEPSKKSRPNEDTENNVELPEGKVDLWTPLNCLVEAANRTKSSKLTSQGLSLAKSEPPTTPNGGLSMPEITAKSEPSAAVHSELRMPKTKNKDNGHKTKFGDDKDENVVPLGQVRRRRVRPSGQKRAAASESSTSAQVMLDAAGGRCNRENCPIWFSLVASEDQKVDVPLPQISACYLRIKDSSVPVSFIKKYLVKKLNLASEAEVEIMCGGRPVLPSLQLHNLVDLWFRTASSSKKIPASVGSSAKDFVMVLSYSRKPLPP 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele2000087g0090 431 SMART ring_2 19 59 IPR001841 -
Lele2000087g0090 431 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 429 IPR044807 GO:0004842
Lele2000087g0090 431 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Lele2000087g0090 431 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Lele2000087g0090 431 SUPERFAMILY RING/U-box 13 84 - -
Lele2000087g0090 431 Gene3D - 304 408 - -
Lele2000087g0090 431 MobiDBLite consensus disorder prediction 210 275 - -
Lele2000087g0090 431 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Lele2000087g0090 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 112 IPR013083 -
Lele2000087g0090 431 MobiDBLite consensus disorder prediction 254 275 - -
Lele2000087g0090 431 MobiDBLite consensus disorder prediction 159 191 - -
Lele2000087g0090 431 MobiDBLite consensus disorder prediction 210 236 - -
Lele2000087g0090 431 MobiDBLite consensus disorder prediction 159 188 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele2000087g0090 5 350 C3H Transcription Factor Family AT2G30580 42.975 2.07e-86 265