Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele2000087g0087 ATGGCCGCCTCTAACCAGCCTAAGTCCAAGAAATCTGCAGTCGCGAGGAAACCCAAATCCTCGCCCTCACACCCTCCTTTCGCTGAGATGATCACGGATGCGATCGCAAGTCTCAAAGAGAGAACCGGTTCCAGCCAATATGCCATTACCAAGTTCATCGAGGAGAAGCACAAGCAGTTGCCTCCGACTTTCAAGAAACTCTTGCTGAACAATTTAAAGAAATCGGTGGCCGCTGGCAAGCTCGTCAAGGTCAAGAACTCCTTCAAGCTTCCGCCCAAAAAGCCGGCTCCTGATAGTACGAAGGAGACAAAACCTACCGTCAAGGCCGTACCTAAGTCTCAGCCTAAGCCCTCTGCTAAAACAAAAGTAGCGGCTAAGCCTAAAGCCGTTCGCAAACCCAAATCCAAACCTACTGCTGCAAGAAGTGCGAAAGCGACTTCGAAGCCGGCAAAGACATCGGCCAGGACTACGCTAGGGAAGAGGGTAGCTAAGACGGCAAAGAGTGTGAAGAAGCCCAAGAGTGTGAAATCGCCAGCCAAAAAAGAGGCTGTCAAGAAGGCTAAGAAGTAG 570 0.5088 MAASNQPKSKKSAVARKPKSSPSHPPFAEMITDAIASLKERTGSSQYAITKFIEEKHKQLPPTFKKLLLNNLKKSVAAGKLVKVKNSFKLPPKKPAPDSTKETKPTVKAVPKSQPKPSAKTKVAAKPKAVRKPKSKPTAARSAKATSKPAKTSARTTLGKRVAKTAKSVKKPKSVKSPAKKEAVKKAKK 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele2000087g0087 189 Gene3D - 18 106 IPR036388 -
Lele2000087g0087 189 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 23 92 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele2000087g0087 189 PANTHER HISTONE H1 6 183 - -
Lele2000087g0087 189 MobiDBLite consensus disorder prediction 1 28 - -
Lele2000087g0087 189 Pfam linker histone H1 and H5 family 24 90 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele2000087g0087 189 MobiDBLite consensus disorder prediction 140 154 - -
Lele2000087g0087 189 PRINTS Histone H5 signature 37 54 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele2000087g0087 189 PRINTS Histone H5 signature 155 172 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele2000087g0087 189 PRINTS Histone H5 signature 116 130 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele2000087g0087 189 PRINTS Histone H5 signature 177 189 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele2000087g0087 189 PRINTS Histone H5 signature 10 31 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele2000087g0087 189 SUPERFAMILY "Winged helix" DNA-binding domain 20 102 IPR036390 -
Lele2000087g0087 189 SMART h15plus2 21 87 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele2000087g0087 189 MobiDBLite consensus disorder prediction 88 189 - -
Lele2000087g0087 189 CDD H15 21 101 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele2000087g0087 30 123 Single Myb Histone (SMH) Gene Family AT1G49950 34.043 7.75e-10 55.1