Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele2000087g0063 ATGTTTCCTGCGCCATGTCGTCAAATCAGAAATGGCATTGAACATGCGCGATGCCTTTTGAGGGGGAGAGCTACCATAGCACCCTCGCTGTCCAGTCTGCGAGTTCTTTATCTATCAAGCAAGTTATTGCAGAGCTGTGTTCTGACGATGACGAGGACTCCTTGTTGTGAGAAGATGGGACTGAAGAAGGGACCCTGGACTCCTGAAGAAGATCAGATTTTGATCTCTTATATTCAACGATATGGCCACGGAAACTGGCGGGCCCTTCCTAAACAGGCCGGTTTATTGAGGTGTGGAAAGAGTTGTAGGCTTCGGTGGATAAATTACTTGAGACCGGATATAAAACGAGGGAAATTCAGCAAGGAAGAAGAAGAAACCATCCTCAAGCTGCATCAAATTCTTGGGAATAGATGGTCTGCTATTGCGGCGAGATTACCGGGACGAACAGATAACGAAATAAAGAATTTTTGGCACACCCACCTTAAGAAGAGGCTTGAAAGATGCCAAGTGCTTAATGTAAGTGCGTTGTCCTCTTCAAGTAAAGGGGTGGTGATGCCGCCTGTGCCACAGTTAGTAGTAGCAGCGGAATCATCGAGTGCCGCTAATTATCTTGGTTTCACCGGCAAAGTTCTGACGAGTGCCAGTGAGGGTTTAGCGTCGAGGGAATATGCGGCAGCCGTGGATTCAGGATTCCATGCGGCGTCTGGGGAAACCCTAGGCGGCCATAGATCTAACAAGACCAGTGAAGAAATGGAATTTTGGTACGATCTATTCATGAAAGCCGGACACCCGACGCAAGGGCATGCAAATAATCTTGGATAA 822 0.4769 MFPAPCRQIRNGIEHARCLLRGRATIAPSLSSLRVLYLSSKLLQSCVLTMTRTPCCEKMGLKKGPWTPEEDQILISYIQRYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSKEEEETILKLHQILGNRWSAIAARLPGRTDNEIKNFWHTHLKKRLERCQVLNVSALSSSSKGVVMPPVPQLVVAAESSSAANYLGFTGKVLTSASEGLASREYAAAVDSGFHAASGETLGGHRSNKTSEEMEFWYDLFMKAGHPTQGHANNLG 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele2000087g0063 273 Pfam Myb-like DNA-binding domain 116 161 IPR001005 -
Lele2000087g0063 273 Pfam Myb-like DNA-binding domain 63 110 IPR001005 -
Lele2000087g0063 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 110 IPR017930 -
Lele2000087g0063 273 FunFam MYB-related transcription factor 62 115 - -
Lele2000087g0063 273 FunFam MYB transcription factor 118 165 - -
Lele2000087g0063 273 ProSiteProfiles Myb-like domain profile. 58 110 IPR001005 -
Lele2000087g0063 273 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 50 196 - -
Lele2000087g0063 273 Gene3D - 118 165 - -
Lele2000087g0063 273 Gene3D - 62 115 - -
Lele2000087g0063 273 SMART sant 62 112 IPR001005 -
Lele2000087g0063 273 SMART sant 115 163 IPR001005 -
Lele2000087g0063 273 CDD SANT 118 161 IPR001005 -
Lele2000087g0063 273 CDD SANT 65 110 IPR001005 -
Lele2000087g0063 273 ProSiteProfiles Myb-like domain profile. 111 161 IPR001005 -
Lele2000087g0063 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 165 IPR017930 -
Lele2000087g0063 273 SUPERFAMILY Homeodomain-like 59 157 IPR009057 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele2000087g0063 50 258 MYB Transcription Factor Family AT2G31180 46.914 4.77e-75 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele2000087g0063 Myb_DNA-binding 2e-15 CL0123