Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele2000087g0056 ATGGGAACTCTGAGCTTTGCCTTGAAACATGCTATTAATGGGCAAGCAGCACCGCAGCTATATTTTGATCTTTTGCTGGAAGTGAAAAGCATGGGGCCATTATCACGCAAGTGTTATTGCCTCGTTCCAATGCCCATCCATGCAAGCCAGGCTAATGATTTGGATGAGGGCAAATGCTCCCAACGGAATCATTATTCATTTCTCATGCCTGTATCTTTAACAAATGAAGGAGCAGAAAGGGATGCAAATGCGCCACGAATTAGGTGTCCCAGGGTTGTACCTCTTGCGAATGGCAGGAGGAGGATGTGGGATTTTGGGATCACTCTGCTTGGATTTTCTTGGCATATCCTGAGAATGACGCCTCTTTCATGCTCATGTGCTGTGACACAAAGAGAGATGGAGGAGATCCTTCTTAACAACCACTACCAATTGTGCGATGAGATCGGGCGGGGGCGATTCGGCACCATCTTCCGCTGCATTCACCTCCTCTCCGGTCACTACTATGCCTGCAAACTCATCGACAAGCGCCTCCTCTCCGATCCCACCGATCGCTCTTGCCTCCACAACGAGCCCAAATTCATGTCTCTCCTCTCTCCTCACCCCAACATTCTTCAGATCTTTCACGTCTTCCACCACGAACACTTTCTCTCCATCGTCCTCGAGCTCTGCCACCCCCACACCCTCCTCGACCGCCTCGTCGCTCGCCCCTTCCTGGAGACCGAAGCCGCTTCTATCATGAATCAACTCCTCCAGGCCCTCGCCCACTGCCACCGTCTCGGCGTAGCCCACAGAGACATCAAGCCCGACAATCTCTTGTTTGATTCCAGTACTAATCTCAAGGTCTCCGACTTTGGCTCCGCACAGTGGTTCGGCGACGGGAGCAGCATGAGTGGAGTGGTCGGGACGCCTTACTATGTGGCGCCGGAGGTATTACTCGGGAGAGACTACAATGAGAAAGTTGATGTGTGGAGTAGCGGTGTGATTTTGTACATAATGTTGGCCGGAGTTCCTCCCTTCCACGGGGAATCGCCGGCCGAGATATTTGAGGCTGTGATCAGGGCCAATCTGAGGTTCCCTTCCAGGATTTTCAGGTCCGTGTCTCCATCTGCCAAGGATCTCCTCAGGAAGATGATATGTAGGGATGTTTCAAGGAGATTATCGGCAGAGCAAGCCTTGGGGCATCCGTGGATCCAGAGTGGAGGAGAGAAAAAGGATCTGACGTGA 1224 0.5212 MGTLSFALKHAINGQAAPQLYFDLLLEVKSMGPLSRKCYCLVPMPIHASQANDLDEGKCSQRNHYSFLMPVSLTNEGAERDANAPRIRCPRVVPLANGRRRMWDFGITLLGFSWHILRMTPLSCSCAVTQREMEEILLNNHYQLCDEIGRGRFGTIFRCIHLLSGHYYACKLIDKRLLSDPTDRSCLHNEPKFMSLLSPHPNILQIFHVFHHEHFLSIVLELCHPHTLLDRLVARPFLETEAASIMNQLLQALAHCHRLGVAHRDIKPDNLLFDSSTNLKVSDFGSAQWFGDGSSMSGVVGTPYYVAPEVLLGRDYNEKVDVWSSGVILYIMLAGVPPFHGESPAEIFEAVIRANLRFPSRIFRSVSPSAKDLLRKMICRDVSRRLSAEQALGHPWIQSGGEKKDLT 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele2000087g0056 407 Gene3D Phosphorylase Kinase; domain 1 119 224 - -
Lele2000087g0056 407 CDD STKc_CAMK 141 396 - -
Lele2000087g0056 407 PANTHER SERINE/THREONINE-PROTEIN KINASE 136 403 - -
Lele2000087g0056 407 Gene3D Transferase(Phosphotransferase) domain 1 226 406 - -
Lele2000087g0056 407 FunFam Phosphoenolpyruvate carboxylase kinase 1 226 406 - -
Lele2000087g0056 407 Pfam Protein kinase domain 142 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele2000087g0056 407 SUPERFAMILY Protein kinase-like (PK-like) 135 399 IPR011009 -
Lele2000087g0056 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
Lele2000087g0056 407 SMART serkin_6 142 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele2000087g0056 407 ProSitePatterns Protein kinases ATP-binding region signature. 148 171 IPR017441 GO:0005524
Lele2000087g0056 407 ProSiteProfiles Protein kinase domain profile. 142 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele2000087g0056 123 405 EF-hand Containing Proteins AT1G50700 39.373 1.57e-71 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lele2000087g0056 Pkinase 6.6e-68 CL0016