Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g1489 ATGGGCGGTGGCAACAACATAAACTCAGTGTTCTATGCAGACTCATACCATCCCATTCAAGCAGGCAGCATAGATGGCACAGATATTCTTCCTCACGATAATGCTGTTTATCGAGCTCTTCTCTGTTCTTCCGCTGGCCTCTACGACCCATTTGGCGATCCCAAGGCCGCAGGGAACCCATATTGTACTGTCTTCGTTGGCCGCCTCTCTCGCGTCACAACAGAAGAAACCCTTTACAAAGTTATGGGCAAGTACGGTCAGGTGAAGAACTTGCGCTTGGTCAGGGACACTGTGACCGGTGCCTCCCGTGGTTATGCTTTTGTTGAATATGAAACTGAAAGTGAGATGCGTCGTGCTTATGAGGATGCTCATCATTCTTTTATTGATGATTGTGAAATCCTAGTTGATTTTAACAGACAGCAATTGATGCCCGGGTGGATTCCTAGACGGTTAGGCGGTGGTCTTGGCAGTAAGAAGGAATCTGGACAACTTCGTTTTGGTGGAAGGGAAAGGCCATTTCGAGCTCCACTGAGACTAATACCATACAAGGATTTGGAGAGGCTTGGCATTCCACCTCCTCCTGAAGGAAGATACGTGTCACGCTTTCAGATCCCATCGCCTCCTAGAAGAGAAAGGAGCAGTCGAGACAGGGAAGAAGGCTCTCGCAGAAGGAGTTCTAATGACAGGATTGAAGGTGGAGCTGGCAGGCATTATAAGAGTAGTTCAATTCACCGAGATGACTATACTCATCGAAGGAGCTCTGTGGAAAGAAGAGAGGAGAGAGATGGGCACTACTATAGAAGTAGGAGTCATGCTGAGAAGGAACGTCATTCCAGGAGATCTGCTGAAAGGCGAGACCACTCTCGTAAAAGGAAAGATAGAGATGAACACTCTCAGAGGAGGCAGAAACATGACCATTATTCCCATCGTGACGAGTAA 939 0.4782 MGGGNNINSVFYADSYHPIQAGSIDGTDILPHDNAVYRALLCSSAGLYDPFGDPKAAGNPYCTVFVGRLSRVTTEETLYKVMGKYGQVKNLRLVRDTVTGASRGYAFVEYETESEMRRAYEDAHHSFIDDCEILVDFNRQQLMPGWIPRRLGGGLGSKKESGQLRFGGRERPFRAPLRLIPYKDLERLGIPPPPEGRYVSRFQIPSPPRRERSSRDREEGSRRRSSNDRIEGGAGRHYKSSSIHRDDYTHRRSSVERREERDGHYYRSRSHAEKERHSRRSAERRDHSRKRKDRDEHSQRRQKHDHYSHRDE 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g1489 312 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 140 IPR000504 GO:0003723
Lele19g1489 312 CDD RRM_snRNP35 59 151 IPR034146 -
Lele19g1489 312 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 11 286 - -
Lele19g1489 312 Gene3D - 49 169 IPR012677 -
Lele19g1489 312 SUPERFAMILY RNA-binding domain, RBD 50 168 IPR035979 GO:0003676
Lele19g1489 312 SMART rrm1_1 63 136 IPR000504 GO:0003723
Lele19g1489 312 MobiDBLite consensus disorder prediction 208 312 - -
Lele19g1489 312 FunFam Small nuclear ribonucleoprotein U11/U12 subunit 35 49 170 - -
Lele19g1489 312 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 133 IPR000504 GO:0003723
Lele19g1489 312 MobiDBLite consensus disorder prediction 186 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g1489 Lele-ChrLele19 18186612 18191989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g1489 62 137 Eukaryotic Initiation Factors Gene Family AT2G23350 27.632 1.04e-06 48.1