Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g1479 ATGATCAATGTCGGTACCAATCCTGCAGTTCCACAAGCTCCCCGAAATACAACTTTTCCACCATCCTTTCCAGATGGCTCCTCCCCTCCGGCTGTTAAAACCCGCTTATGCAACAAGTATAATACTGCCGAAGGTTGCAAATTTGGCGAGAAATGCCACTTCGCCCATGGTGAGTGGGAGCTTGGAAAGCCAACAATCCCATCATATGAAGATCCTCGTTCCTTGGGGCAAATGCAAGGCCGGGTTAGTGGACGGGTCGAGCTACCATCTCCTGCTCATGGAGCTGCAGCCAGCTTTGGTGCCTCTGCTACCGCTAAGATTAGTATCAACGCTTCGCACGCAGGAGCTATCATAGGAAAAAATGGTGTCAATTCTAAGCAAATTTGTCGTGTGACAGGAGCAAAACTTTCGATACGGGATCATGAATCAGATCCAAGTCTCAAGAACATTGAGCTGGAGGGCACTTTTGATCAGATCAAACAAGCTAGTGCTATGGTTCGTGAACTTATTTTAAATGTTGGTTCTGTCTATGGGCCGCCTCCGAAAAGCATGGCACCACATGGCCCTGCCCCAGCTAGCAACTTCAAGACAAAACTCTGTGAGAACTTTGCCAAAGGATCTTGCACTTTTGGGGATCGGTGCCATTTCGCACACGGAGCCGAAGAATTACGCTAG 675 0.4859 MINVGTNPAVPQAPRNTTFPPSFPDGSSPPAVKTRLCNKYNTAEGCKFGEKCHFAHGEWELGKPTIPSYEDPRSLGQMQGRVSGRVELPSPAHGAAASFGASATAKISINASHAGAIIGKNGVNSKQICRVTGAKLSIRDHESDPSLKNIELEGTFDQIKQASAMVRELILNVGSVYGPPPKSMAPHGPAPASNFKTKLCENFAKGSCTFGDRCHFAHGAEELR 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g1479 224 PANTHER CCCH ZINC FINGER/TIS11-RELATED 180 224 IPR045877 GO:0003729
Lele19g1479 224 MobiDBLite consensus disorder prediction 1 28 - -
Lele19g1479 224 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 93 173 IPR036612 GO:0003723
Lele19g1479 224 FunFam Zinc finger CCCH domain-containing protein 189 224 - -
Lele19g1479 224 Gene3D K Homology domain, type 1 98 192 IPR036612 GO:0003723
Lele19g1479 224 ProSiteProfiles Zinc finger C3H1-type profile. 194 221 IPR000571 GO:0046872
Lele19g1479 224 Gene3D - 193 224 - -
Lele19g1479 224 Gene3D - 26 63 - -
Lele19g1479 224 SUPERFAMILY CCCH zinc finger 193 224 IPR036855 GO:0046872
Lele19g1479 224 SMART kh_6 101 171 IPR004087 GO:0003676
Lele19g1479 224 CDD KH-I 106 166 - -
Lele19g1479 224 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 195 219 IPR000571 GO:0046872
Lele19g1479 224 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 33 58 IPR000571 GO:0046872
Lele19g1479 224 ProSiteProfiles Zinc finger C3H1-type profile. 31 59 IPR000571 GO:0046872
Lele19g1479 224 SMART c3hfinal6 31 58 IPR000571 GO:0046872
Lele19g1479 224 SMART c3hfinal6 194 220 IPR000571 GO:0046872
Lele19g1479 224 Pfam KH domain 105 168 IPR004088 GO:0003723
Lele19g1479 224 FunFam Zinc finger CCCH domain-containing protein 26 63 - -
Lele19g1479 224 ProSiteProfiles Type-1 KH domain profile. 102 166 - -
Lele19g1479 224 SUPERFAMILY CCCH zinc finger 30 62 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g1479 Lele-ChrLele19 17241317 17241991 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele19g1479 KH_1 5.4e-11 CL0007