Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele19g1457 | ATGATAGTATCCGGCGAGGTGCCAGAAGAGCCAGTAGTGTCGAAGAAGTCTGGGTTGCTCTATGAGAAGCGTTTAATTGAGAGGCACATTGCGGACTATGGGAAGTGTCCAATTACTGGAGAACCTCTTACTTTAGATGACATTGTTCCAATAAAAACAGGCAAGATAATGAGGCCAAGGCCTGTACAGGCAGCAAGTATCCCGGGCATGCTTGGAATGTTCCAAAATGAATGGGATGGGTTGATGCTGTCTAATTTTGCATTAGAGCAGCAACTACACACAGCAAGGCAAGAGCTAAGTCATGCTCTATATCAACATGATGCTGCTTGCCGAGTGATTGCAAGGCTTAAAAAGGAAAGGGATGAAGCAAGGTCATTGCTTGCACAAGCGGAAAGGCAGTTCCCTGTTGCCACACAAAATACAATGACAGCAAATGCTGTTGCTCTGAGCAATGGGAAAAGAGCTGCTGAAGATGAGGAACAGGCCCCTGGTGGGAAGAAATTACTTTCTGGAATCACTAGTGCCATAATTGATGAGCTGACTGAGTGTAATGCATCTCTGTCGCAGCAAAGGAAAAAGCGGCAGATTCCTGCAACTTTGGCTCCTGTTGAGGCTTTAGAGGGATATACCCAGATATCTAGTCATCCCTTTCACAAAACGAGCAAACCAGGCATTGTATCTATGGATATCCTTTATTCCAAGGATTTGATTGCCACTGGAGGGCTAGATACAAATGCTGTTATTTTTGACCTGCCATCAGGGCAGATATTATCCACACTCAGTGGTCACTCAAAAAAGGTTACAAGTGTGAAATTTGTAGCTCAGGGCGATCAGTTTATAACTGGTTCAGCAGACAAGACAGTTCGCTTGTGGCAAAGCTCAGATGATGGTAACTACATCTGCAGACATGTATTGAAGGATCATACAGCCGAGGTGCAAGCAGTCACTGTCCATGCTACTAACAACTACTTCGTCACTGCTTCCCTTGACAACACATGGTGCTTTTATGAAATTTCTTCAGGGACATGTCTGAATCAGGTTTCAGACTCTTCTGGATCTTCTGGAGGCTATACATCTGCAGCTTTTCATCCTGATGGTCTCATTCTTGGGACTGGCACTGCAGAAGCTCTTGTTAAGATCTGGGATGTAAAAAGTCAGGCAAATGTTGCTAGGTTTGACGGACATGTAGGGGCTGTGACTGCTATATCCTTTTCTGAGAATGGTTACTTCCTTGCGACTGCAGCTCATGATGGTGTAAAACTATGGGATCTTCGTAAACTGAAAAACTTCCGGACTTTTGCTCCCTATGATCCAGACAGTCCAACAAATTCAGTGGAATTTGACCATAGCGGTTCCTACCTTGGAGTTGCTGGATCTGATGTTAGGATTTACCAAGTTGCAAACGTGAAATCTGAATGGAACTGTATTAAAACTTTCCCTGATCTGTCTGGAACTGGGAAAGCCACCTGTGTTAAATTCGGTCCAGATGCAAAATATGTAGCAGTCGGATCAATGGACCGTAATCTTCGAATATTTGGCCTGCCTAGTGAAGATGGGAATACTGAGTCATAA | 1572 | 0.4427 | MIVSGEVPEEPVVSKKSGLLYEKRLIERHIADYGKCPITGEPLTLDDIVPIKTGKIMRPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQFPVATQNTMTANAVALSNGKRAAEDEEQAPGGKKLLSGITSAIIDELTECNASLSQQRKKRQIPATLAPVEALEGYTQISSHPFHKTSKPGIVSMDILYSKDLIATGGLDTNAVIFDLPSGQILSTLSGHSKKVTSVKFVAQGDQFITGSADKTVRLWQSSDDGNYICRHVLKDHTAEVQAVTVHATNNYFVTASLDNTWCFYEISSGTCLNQVSDSSGSSGGYTSAAFHPDGLILGTGTAEALVKIWDVKSQANVARFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFAPYDPDSPTNSVEFDHSGSYLGVAGSDVRIYQVANVKSEWNCIKTFPDLSGTGKATCVKFGPDAKYVAVGSMDRNLRIFGLPSEDGNTES | 523 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele19g1457 | 523 | CDD | WD40 | 224 | 512 | - | - | |
| Lele19g1457 | 523 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 392 | 432 | IPR001680 | GO:0005515 | |
| Lele19g1457 | 523 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 260 | 292 | - | - | |
| Lele19g1457 | 523 | SUPERFAMILY | RING/U-box | 3 | 51 | - | - | |
| Lele19g1457 | 523 | SUPERFAMILY | WD40 repeat-like | 221 | 512 | IPR036322 | GO:0005515 | |
| Lele19g1457 | 523 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 305 | 346 | IPR001680 | GO:0005515 | |
| Lele19g1457 | 523 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 350 | 385 | - | - | |
| Lele19g1457 | 523 | Pfam | WD domain, G-beta repeat | 388 | 423 | IPR001680 | GO:0005515 | |
| Lele19g1457 | 523 | Pfam | WD domain, G-beta repeat | 473 | 512 | IPR001680 | GO:0005515 | |
| Lele19g1457 | 523 | Pfam | WD domain, G-beta repeat | 254 | 291 | IPR001680 | GO:0005515 | |
| Lele19g1457 | 523 | Gene3D | - | 200 | 514 | IPR015943 | GO:0005515 | |
| Lele19g1457 | 523 | Coils | Coil | 113 | 133 | - | - | |
| Lele19g1457 | 523 | PANTHER | PRE-MRNA-PROCESSING FACTOR 19 | 3 | 515 | IPR038959 | GO:0000398|GO:0000974|GO:0006281|GO:0061630 | |
| Lele19g1457 | 523 | CDD | RING-Ubox_PRP19 | 3 | 52 | - | - | |
| Lele19g1457 | 523 | FunFam | Pre-mRNA-processing factor 19, putative | 2 | 56 | - | - | |
| Lele19g1457 | 523 | Pfam | Prp19/Pso4-like | 64 | 129 | IPR013915 | - | |
| Lele19g1457 | 523 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 58 | IPR013083 | - | |
| Lele19g1457 | 523 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 350 | 391 | IPR001680 | GO:0005515 | |
| Lele19g1457 | 523 | SMART | Ubox_2 | 4 | 64 | IPR003613 | GO:0004842|GO:0016567 | |
| Lele19g1457 | 523 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 392 | 425 | - | - | |
| Lele19g1457 | 523 | ProSiteProfiles | U-box domain profile. | 1 | 68 | IPR003613 | GO:0004842|GO:0016567 | |
| Lele19g1457 | 523 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 260 | 292 | IPR001680 | GO:0005515 | |
| Lele19g1457 | 523 | SMART | WD40_4 | 385 | 423 | IPR001680 | GO:0005515 | |
| Lele19g1457 | 523 | SMART | WD40_4 | 253 | 292 | IPR001680 | GO:0005515 | |
| Lele19g1457 | 523 | SMART | WD40_4 | 472 | 513 | IPR001680 | GO:0005515 | |
| Lele19g1457 | 523 | SMART | WD40_4 | 298 | 337 | IPR001680 | GO:0005515 | |
| Lele19g1457 | 523 | SMART | WD40_4 | 208 | 250 | IPR001680 | GO:0005515 | |
| Lele19g1457 | 523 | SMART | WD40_4 | 340 | 382 | IPR001680 | GO:0005515 | |
| Lele19g1457 | 523 | SMART | WD40_4 | 426 | 465 | IPR001680 | GO:0005515 | |
| Lele19g1457 | 523 | FunFam | pre-mRNA-processing factor 19 | 197 | 514 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele19g1457 | Lele-ChrLele19 | 13436931 | 13448902 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele19g1457 | 3 | 522 | U-box Gene Family | AT1G04510 | 75.000 | 0.0 | 816 |