Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g1446 ATGGGTTGTTGGAGTATAATAGAAGAAGAAGCTGGTTGGAGGAAGGGGCCTTGGACTGCTGAAGAAGACAGACTTCTGATTGATTATGTCAGAATGCATGGTGAAGGAAGATGGAACTCAGTTTCAAGACTTGCAGGACTGAAAAGAAATGGAAAGAGTTGCAGATTGAGGTGGGTGAATTACCTGAGACCAGACCTCAAGAGAGGTCAGATAACACCACAAGAAGAGAGCATAATTATAGAGCTTCATGCTAGGTGGGGAAACAGATGGTCAACAATTGCAAGGAGCTTGCCAGGAAGAACAGACAATGAGATAAAGAATTATTGGAGGACTCACTTCAAGAAGAAGGCAAAGAGTCCGACTAATGCCGGAGAAAAGGCGAAAAATCGCCTTTGGAGAAGACAACAGTTTCATCAACAACAAAAACAAAAGGAGCAACAGCAACAACAATTACAGTTGGACATGAAAGGTATCATGGCCTTACTTGAAGGCAATAACAATGATTATTACAAAGTGCCTTCTACTCTTTGCTCTTCAATGGCCAACTTCTATCCAAACGCCTCTGAAGAACAAGGCTACTTCTACTCTATGATCACTAATAATAATAATTCCTCAGCACCAGAAGCCTTAAATGAAGAAATTTTCTGGGATGGCCTTTGGAATTTGGACGATTTTCATGGAAATTTCAATGCAACTAATACAACAAACAAAGCCAATCTGCACAATCTGGTCGTTTCCTAA 741 0.4076 MGCWSIIEEEAGWRKGPWTAEEDRLLIDYVRMHGEGRWNSVSRLAGLKRNGKSCRLRWVNYLRPDLKRGQITPQEESIIIELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKSPTNAGEKAKNRLWRRQQFHQQQKQKEQQQQQLQLDMKGIMALLEGNNNDYYKVPSTLCSSMANFYPNASEEQGYFYSMITNNNNSSAPEALNEEIFWDGLWNLDDFHGNFNATNTTNKANLHNLVVS 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g1446 246 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Lele19g1446 246 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Lele19g1446 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 62 IPR017930 -
Lele19g1446 246 FunFam MYB-related transcription factor 72 116 - -
Lele19g1446 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lele19g1446 246 CDD SANT 72 113 IPR001005 -
Lele19g1446 246 Gene3D - 72 116 - -
Lele19g1446 246 Gene3D - 14 67 - -
Lele19g1446 246 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lele19g1446 246 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Lele19g1446 246 CDD SANT 17 62 IPR001005 -
Lele19g1446 246 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Lele19g1446 246 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 11 189 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lele19g1446 246 FunFam Myb transcription factor 15 67 - -
Lele19g1446 246 SMART sant 14 64 IPR001005 -
Lele19g1446 246 SMART sant 67 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g1446 Lele-ChrLele19 13140852 13142056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g1446 10 245 MYB Transcription Factor Family AT4G13480 58.621 1.72e-85 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele19g1446 Myb_DNA-binding 1.7e-16 CL0123