Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g1431 ATGGCATCTCACAACTCCTCTGTCCCAAGTTATGGTGTTAATCCAGCGATCAATATTAGTGCAAGTCAACTCCGAGAAAGTCATCAGAGGGAGATTAAGCTTAGCAGATCTTGTGTCCCACCCCAAATGGCAGCTATCCCACCAGTCCCAATACCTCCAACTTACCCTCCAGGTATTATTCTTGGAGAACATCTATTCTCAACAAGAGAGTTGATATTTCGCCTTTATGGTACCGACAATACTAGTAGTATCACCACAAGAAAAAGGGTTAATACCGACAATTCTGGTATGAATTCCCAAGATGTTGATAAGAGAGAAGGCACAAATGGTAACAAATTTGATGGGCGAACACACAGCCTGCTTGCCCAAGAATATGGTCCATACACGTGCCCTAGATGCGACCAGGTATTCCCAACATCACAGCACATCGCCGCGCATGTGAAATCCCACTGTAGGGCGGAAACTAGAGATATGAGGAAACAACGTATGGAGGCCAACATAAGTAAAAGAACCAAAAACCTTCGCCTTCATGTCTCAAGGGAAGGGGTAACGATTGTGTCAGATGCCTCGAAGTCAGAACCAGAAAACGTTGTTGTTCAACAAAGAAATTATGGATCTGTTAAGGTTGAAACACAGGGTCTCGTCACGCACTGCGATTTTCCTGAGGTTCCTCCTAGATTTGGAGGCCACTACTATCGATCACCATCTGGTGTCATAAAGGATGGTCCAAAGGTCCCTCCAGGGTTTGAAGGCCATCATTACGAATCATCATCTGGGTTCACAATCAAGCGTGAACCTTTAAAACTTGAAGGCATGAAGAAAATCCATAATTTCATTATGGTGTTTGATATTGGCCAAATGGAGAACATCTCATCTTATCAGTGGAGTCAGATTCTTGAATCGGATGGTTCGACTTCAAAAGAGGATTGCAAAAGCAAGAGCAAAGACGTTATGGTTCCACTGGACGAGCCTTTATGGCAGCTGGCTCGCAGGAACCCAGAGAGAGAGTCAATTCTACTGAGGCCCATCCATTGCTTTCGGATTTAA 1047 0.4441 MASHNSSVPSYGVNPAINISASQLRESHQREIKLSRSCVPPQMAAIPPVPIPPTYPPGIILGEHLFSTRELIFRLYGTDNTSSITTRKRVNTDNSGMNSQDVDKREGTNGNKFDGRTHSLLAQEYGPYTCPRCDQVFPTSQHIAAHVKSHCRAETRDMRKQRMEANISKRTKNLRLHVSREGVTIVSDASKSEPENVVVQQRNYGSVKVETQGLVTHCDFPEVPPRFGGHYYRSPSGVIKDGPKVPPGFEGHHYESSSGFTIKREPLKLEGMKKIHNFIMVFDIGQMENISSYQWSQILESDGSTSKEDCKSKSKDVMVPLDEPLWQLARRNPERESILLRPIHCFRI 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g1431 348 ProSiteProfiles Zinc finger C2H2 type domain profile. 128 155 IPR013087 -
Lele19g1431 348 SMART c2h2final6 128 150 IPR013087 -
Lele19g1431 348 ProSitePatterns Zinc finger C2H2 type domain signature. 130 150 IPR013087 -
Lele19g1431 348 MobiDBLite consensus disorder prediction 88 115 - -
Lele19g1431 348 MobiDBLite consensus disorder prediction 88 104 - -
Lele19g1431 348 SUPERFAMILY beta-beta-alpha zinc fingers 116 151 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g1431 Lele-ChrLele19 12419169 12421189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g1431 101 185 C2H2 Transcription Factor Family AT2G18490 42.353 1.75e-17 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele19g1431 None None None