LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele19g1361	ATGGATTCTCCTGGTGCTGGTTCTGGTGATGTTATTATGGACCAGAAGAAGAGGAAGAGGATGCTGTCGAATCGGGAGTCAGCGCGGCGATCGAGGATGAAGAAGCAGCAACATCTGGATGATGTGTTGAGGCAAGTGGGAGATCTGAGGAAGGAGAATGAAGAGATCATGAAGAACTTGAGCATCACCAACCAACATTATCTGAACATGGAGTCAGAAAATGCAATCCTGAGGACTCAAATGGCTGAGTTGACCAACAGATTGGAATCTCTCAATGAGATCATAAGTTACATAAACAATAATTCATCCAATAATTATATCTTTGATGATGATCATAATGAGACTGAAATGATCAATGATTGTGGCTTCTTCAACCCTAATTGGAATCAACCTATGATCATGGCTTCTGGTGGCAATAATATGTTGTATTGA	432	0.4097	MDSPGAGSGDVIMDQKKRKRMLSNRESARRSRMKKQQHLDDVLRQVGDLRKENEEIMKNLSITNQHYLNMESENAILRTQMAELTNRLESLNEIISYINNNSSNNYIFDDDHNETEMINDCGFFNPNWNQPMIMASGGNNMLY	143

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele19g1361	143	MobiDBLite	consensus disorder prediction	1	40	-	-
	Lele19g1361	143	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	14	77	IPR004827	GO:0003700\|GO:0006355
	Lele19g1361	143	MobiDBLite	consensus disorder prediction	12	40	-	-
	Lele19g1361	143	Coils	Coil	39	59	-	-
	Lele19g1361	143	Gene3D	-	14	67	-	-
	Lele19g1361	143	Coils	Coil	67	101	-	-
	Lele19g1361	143	CDD	bZIP_plant_GBF1	17	67	IPR045314	GO:0003700\|GO:0006355
	Lele19g1361	143	FunFam	BZIP transcription factor	14	65	-	-
	Lele19g1361	143	SUPERFAMILY	Leucine zipper domain	16	70	IPR046347	GO:0003700\|GO:0006355
	Lele19g1361	143	SMART	brlzneu	12	76	IPR004827	GO:0003700\|GO:0006355
	Lele19g1361	143	PANTHER	BZIP TRANSCRIPTION FACTOR 44	7	139	-	-
	Lele19g1361	143	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	19	34	IPR004827	GO:0003700\|GO:0006355
	Lele19g1361	143	Pfam	bZIP transcription factor	16	74	IPR004827	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele19g1361	Lele-ChrLele19	10525712	10526143	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele19g1361	12	101	bZIP Transcription Factor Family	AT4G34590	61.111	1.61e-34	116

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Lele19g1361		bZIP_1	3.9e-09	CL0018