Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g1349 ATGCATATAGACACTCACTGCCTTCCTACAGACGTTCTGTTGCCTTTTGCTGGTGTCACGAGGTTTGACCAGTTACCAATTTCCAAGAAAGCCAAGGATGCGTTGTTAGAAGCTAAGTTTGTTAAGATGACTGATATACAGAGGGCTTCTTTGCCCCATGCGCTTTGTGGGCGAGATATTTTGGGTGCATCAAAAACTGGGTCGGGAAAAACCTTGGCCTTCATTATTCCGGTCCTGGAAAAGTTATATAGAGAAAAATGGGGTCCTGAAGATGGGGTAGGCAGCATCATTATATCCTCTACAAGAGAATTAGCTGGTCAACATTTTGATGTTTTAAAAAGTGTAGATATGTATTACCATATTCCGTTCAATGTAGATCATGATTGGGTGGATAATGTTTGTTGGCAAACCCTACTCTTCTCGGCAACTCAAACGAAGTCTGTTGAAGTTCTTGCAAGACTAAGTTTAAAGGACCCAGAGTATCTGAGTGTCCATCAAGAGTCTGTGACTGCCACCCCTACTCTCTTGAGACAGCTTGTGATGATTGTTCCTCTGGACCAAAAGTTAGATATGTTGTGGAGTTTCATAAAGTCCCATCTTAACTCCAAAATACTTCTCTCTAGCTGTAAACAGGAAAGGAGAATGGCAATATATTCTGAATTTTGTGAGAAGCGCTCAGTACTCTTCTTAACTGATGTGGCTGCAAGAGGGCATGATTTTAATAAAGCAGTTGACTGGGTTGTTCAGGTTGATTGTCCTGAAAATGTAGCATCTTACAGAGTTGGGAGAACTGCTCGCTACAAATCCGGGGGTAGATCAGTTTTATTTTTGCTACCTTCCGAGATGAAAATGCTTGCGAAATTAGAAGAAGCTAAAGTTCCAATAAATCTTAATAAGGGTCGTGGGTAG 909 0.4136 MHIDTHCLPTDVLLPFAGVTRFDQLPISKKAKDALLEAKFVKMTDIQRASLPHALCGRDILGASKTGSGKTLAFIIPVLEKLYREKWGPEDGVGSIIISSTRELAGQHFDVLKSVDMYYHIPFNVDHDWVDNVCWQTLLFSATQTKSVEVLARLSLKDPEYLSVHQESVTATPTLLRQLVMIVPLDQKLDMLWSFIKSHLNSKILLSSCKQERRMAIYSEFCEKRSVLFLTDVAARGHDFNKAVDWVVQVDCPENVASYRVGRTARYKSGGRSVLFLLPSEMKMLAKLEEAKVPINLNKGRG 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g1349 302 PANTHER RNA HELICASE 20 115 - -
Lele19g1349 302 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 51 228 IPR014001 -
Lele19g1349 302 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 164 IPR027417 -
Lele19g1349 302 Pfam Helicase conserved C-terminal domain 182 267 IPR001650 -
Lele19g1349 302 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 291 IPR027417 -
Lele19g1349 302 Gene3D - 15 134 IPR027417 -
Lele19g1349 302 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 168 302 IPR001650 -
Lele19g1349 302 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 20 48 IPR014014 GO:0003724
Lele19g1349 302 SMART ultradead3 39 179 IPR014001 -
Lele19g1349 302 Gene3D - 146 300 IPR027417 -
Lele19g1349 302 SMART helicmild6 190 268 IPR001650 -
Lele19g1349 302 Pfam DEAD/DEAH box helicase 44 118 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g1349 Lele-ChrLele19 10100030 10103822 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g1349 136 290 Eukaryotic Initiation Factors Gene Family AT5G11170 26.087 1.66e-08 53.1