Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g1318 ATGGTTGAGGATACAATGACAATCGACAAGTCACAAGAAACATCAATACATAATCAGACATCCTTTCTTTCTCTGCTCTCTACTGTCTCGACAACTAAATCCTCAAAGGAACGCATTATTGTCATTGATTACCTAAGTTCAAACTTCAAATTCTCGAAAACCCAGTCCATCTATATATCAGAACGAGTTTTTCATGCTAGGTGCCCTCAACAACCCTTCATCGTGCTGAATTATTTTCAACAGATTGGATTTACTGAAGCCCATATTCAATCTATTGTTTGTCGAACACCCCAAATACTGTTTTCTGATATTGATAAAACCCTGAAGCCAAAAGTTGAGTACTTTCAGCAACTAGGCTTTGATGTTTCTGAGCTTAGAAAGTTTCTATCCAAGAATTCATCTCTTTTGACTTCAAGTTTGAGTAAAACCTTGGCCCCCTCTGTGGAGACTATTAGGAAAATTTCTTGCAATGAGAAAGATCTTGTTAAACTGTTGCATAGAACTGGCCGGATACTCCCATGTCACAAAAGAATTTTGCGCAATGTTGCCTTCTTTGAGAGTTGTGGGATCATTGGATCTCAGCTTTTATATTTACTCAAAAGACAGTCTTTGCTTTTCACCAAACAGGAATCTCTGGTTCAAAACCTTGTTTCGCGGGCTGTAAACCTGGGTTTCCGTGTAAATTCAAGAATGTTGGTGCACGCAATCATTGCAGTCCATGGTTTGAGCACTGAAGCATTTGAAAGAAGGTTGAAGTTAATTCAGAGTTATGGGTTTTCCAAAGACGAGAGCTTACAAATGTTTAGAAAAACTCCATCTCTACTTCCATCTGCTGAGAAGAAACTAAAGTTTGGATTTGAATTCTTCTTGAATGTAGTTATGCTACCTAAGTCAGTGCTTGTTCAAAGACCTATGATTTTGATGTATAGCATGGAAGATAGGTTGATTCCTCGGTACAGAATCTTGCAGCTTTTAATCTCTGAAAATTTACTTAAGAGGAATCCAAGTTTCGTAGAAATGTTAGAAATGCGTGAGGATATATTCTTGAAGAAGTATATTTTGAAGTTCAGATATAAAGCAGAGACTTTGCTGGCGGCTTACGAAAATCGCCATCTTGAAGAGTTGGGTGAGTTCCTTTTCCAGAATTCAAGTCTTTTGACTGGTAGTTTGAATAAAACAATGGCCCCCTTTCTGGAGACTCAGGAAAATTGCTTCAATAAGGAAGATATCATTAAAGGCTTCACAGATCTGAGTCCAGGAAAATCCCATGTCACCACAGAATTTTGCACAATGATGCTTTGTTTGAGAGTTGTGGGATTGTTGGGTCTCAACTTTCAAGGAGAAGAAATTCTTGGAGAGACCTCATTTCATGTTTTCCATTCAATCATCTCTTTACATTCTTGGATGTGCCAGAAGCACAATTTGGTTGCCAGCCCTTCATCTCCTACACTTGGGACTGGTGAAATTTTCCAACTGGTTGAGTCGAAAGAAGGCGAACCTGCTCCGCTCGCCAGTGTGCTGGAGCCATATCCACAACTGACGCTACATCGCGAACAACACACTTATCGAATGATATCATTTTCCTATCAAATGTTTGTGCCAAAATTTCTTGCCCTCATGCTTGATGGCTTGGTGGCCAAGAAAGAGATAGTAGAGATGGAGGCAAAGCTAGAAACAGGAAGAAGAGTTCCTGAAGATATTGTGCTTCCAACCCATCACCTTTCTGCTAAATATGTCTTCGATGTAAACAAGAGCATGGAGCTTTGGATTTGCCAGGCATCCCCAAATACATTCCCAGGCATTGTGATAATGAAGCGCAATATGATCAACATGTCTGCTTTTAGCAGATTCTTGGTAGACGATATTCCCACTAGGGTTTTCGAGAACGGGAAAGCTAAAGGAGTTCCCTTCCCCAAGTACCAGGCCATGAGAATGCATTCGAGCCTTTCGAATGCTGATGCTGGGCCACTAGAGGGGGTTTGGTTAGATTGGTCTAAGGCTCCTTTCACTGCTTATTATCGAAACTTCAAAGTCACAGATCTCATTGCTTCTTCTTCATCTTCTTCATCAAACTCATTCTCTGATTCTAAAGAGCAAAGCATTTATGAGGTTGATGCTAATGGAAGAAGAAGAGTGAGATGGGCTCAGAAGTACTTCATGATATATAACTATTGCTCTGATATCAACCGATTCGCTGAAGGCCTCCCTCCTGAATGCAAACGCTCACGCTTCTAA 2235 0.4031 MVEDTMTIDKSQETSIHNQTSFLSLLSTVSTTKSSKERIIVIDYLSSNFKFSKTQSIYISERVFHARCPQQPFIVLNYFQQIGFTEAHIQSIVCRTPQILFSDIDKTLKPKVEYFQQLGFDVSELRKFLSKNSSLLTSSLSKTLAPSVETIRKISCNEKDLVKLLHRTGRILPCHKRILRNVAFFESCGIIGSQLLYLLKRQSLLFTKQESLVQNLVSRAVNLGFRVNSRMLVHAIIAVHGLSTEAFERRLKLIQSYGFSKDESLQMFRKTPSLLPSAEKKLKFGFEFFLNVVMLPKSVLVQRPMILMYSMEDRLIPRYRILQLLISENLLKRNPSFVEMLEMREDIFLKKYILKFRYKAETLLAAYENRHLEELGEFLFQNSSLLTGSLNKTMAPFLETQENCFNKEDIIKGFTDLSPGKSHVTTEFCTMMLCLRVVGLLGLNFQGEEILGETSFHVFHSIISLHSWMCQKHNLVASPSSPTLGTGEIFQLVESKEGEPAPLASVLEPYPQLTLHREQHTYRMISFSYQMFVPKFLALMLDGLVAKKEIVEMEAKLETGRRVPEDIVLPTHHLSAKYVFDVNKSMELWICQASPNTFPGIVIMKRNMINMSAFSRFLVDDIPTRVFENGKAKGVPFPKYQAMRMHSSLSNADAGPLEGVWLDWSKAPFTAYYRNFKVTDLIASSSSSSSNSFSDSKEQSIYEVDANGRRRVRWAQKYFMIYNYCSDINRFAEGLPPECKRSRF 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g1318 744 PANTHER CGI-12 PROTEIN-RELATED 38 355 IPR003690 GO:0003690|GO:0006355
Lele19g1318 744 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 695 739 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Lele19g1318 744 Gene3D - 612 744 - -
Lele19g1318 744 Gene3D Transcription termination factor 3, mitochondrial 151 357 IPR038538 -
Lele19g1318 744 SUPERFAMILY Concanavalin A-like lectins/glucanases 616 742 IPR013320 -
Lele19g1318 744 FunFam Mitochondrial transcription termination factor-like 140 360 - -
Lele19g1318 744 Pfam mTERF 76 226 IPR003690 GO:0003690|GO:0006355
Lele19g1318 744 Pfam mTERF 241 348 IPR003690 GO:0003690|GO:0006355
Lele19g1318 744 SMART mt_12 162 191 IPR003690 GO:0003690|GO:0006355
Lele19g1318 744 SMART mt_12 126 157 IPR003690 GO:0003690|GO:0006355
Lele19g1318 744 SMART mt_12 90 121 IPR003690 GO:0003690|GO:0006355
Lele19g1318 744 SMART mt_12 297 329 IPR003690 GO:0003690|GO:0006355
Lele19g1318 744 SMART mt_12 265 296 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g1318 Lele-ChrLele19 9592769 9604273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g1318 617 743 Glycoside Hydrolase AT4G14130 58.779 2.53e-43 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lele19g1318 mTERF 6.3e-18 No_clan