Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g1284 ATGCCCTGTTACTCCATCAGGGACCAGGAAAGGAGACTATCTGTGTCAGATGAAAGAGTTAGAGTGGAGAGAACAAAATCTTATGTCTCGCAATATCGGCTTGGGGATGAATTTTTAAATAGAGATACTGCTCAGAGCGGGAGACCAAGGGATAATCTTGCTGAAAGAGAGAAATTGGATGAAGGATTTAAGAATGAAGTTGTTGAGAAATCTTCCAGCAATACGAAGTTAAGTAAAAAAATTCATAGCAAAACACCAGGACACATACCAAGAAATGAGATAATCGAGGTAGGTGAGCAAGAAGATGACAGAGTTAAACATGTTTATTCCAATGAATTGTTCATTGCAAATAGAGGGAAAGAAGAGCATTTGAATGACTTTAGGAATAGGGATAAGTGGCCCAGGATGCTACTCAAGGATGCAAAGTTTGATAGGAGGCAAAGCAGCAGTTCTAGTAAACAAAAGGTTGGACAGTTCAATGAAAGTACAAAGAAGAATGTGAAGCGAGAGGAGAGATCACACAGTCGATCAACTAGTGAAAGATTTGGAAATAGTTACGATAAAAAGCATGGGCATGCTTTGCAGACACCAGCTGATCTAGCTATTGATGAAGTTGCTGTACAAGCAGTTATACAGAGAAAGGATAAGGTATCGGCAAAGCATCTTTTGCGAGTATTTTGTGATTCACCTTCTCAGGCACGGACAACATTGCTGCCTGAATTGTGGGAGTACTTATTTTCTCCACAACTTTCTCATTTGAAGGCATGGTACAACAGGGAAGTTCATATGCTAGTGGATTGGCCAAGTAGAAGGAGAAAAGTAAAGCATCTTAAAAAAGTGTATAATGAGCATTTGGATTCTGGGACTTATTCATTTGCTGTATACTACAAAGACTGGCTCACTGAAGGAGCAGAAGCTCCATCAGTTCCTTCTATCACCGTTCCATCAATATCTGCTTCAGAAAGTTATCATGGAAGTCCCCTTGGTCATTCTTCTGAATTAGCTTCGTCTGTTGATTCATTCTCACCGCAGCCAATGGTTAGCAAAAACTTGTATGATTCTGTCTTTGGTAGCTCGAGTAAAGCTGGAACTGAAGAAGAGGAAGATAATGCCGTAGAAGATGAAGTTGCCGAAGAAGATTCTAAGAAGATGACGCTAGCTATTGAGGTCCATACTAAAGGAACCTTAATGATAGATGGACAAAAATGGCAAGGGAAAAGTGTCAGGGATGATATTGCTAACTCTTCCACACGTGTAAAAAGCAACATGCTATATGATCTCTCACATGAAAGAACAGATGAAGTCACTCTTAGCAAGGTGACAGGATCTGTTTTAGGCATGCAAGATGCCAAAAGGCATTTTGATCCCATTGTGTCTACTAGTTCACCGTCCAGCGAGGAATCAGTCTCCAACTCTGTTATAAATCCAACAGAGATGAGCGCTTCTCCTAAAGGATTATATTTTCCACCTATTCCACAGGAGTTCATTTGTCCTTTGACTGGAACTTTATTTGAGGAACCAACTACCCTTGAGACTGGTCAAACCTTTGAACGAGCAGCCATAAAAGCCTGGTTTGAAAAGGGAAACAGAACTTGCCCGGTGTCTGGAAATAGTTTAGATTGTGTTGCCATGCCATTAACTAACCTTGTTTTGAAGCGTTTCATTGATAATTGGAAGTCAGAAAAATTTAGTCGCATGCTGGATTTTGCTTCTCAAATTGCGGACAAAGAAAGCCATAAGCTGAAACATGATGAGTCTGCTGTTTCTAATTTAGAGAGTCTCTTCACTTCATTGAATGGAGTAAACGAAAGAAATTATGTCAAACAACTCATCTCTATAGGGCTTCTGTCATTTCTTTTTAGGAGGTTTGAATTAGGAAATGTGGAAGAGAAAACGCACGTGTTGGTACTCTTGCTAAATTGTAGTGAAGCTGATTCTGGTTGCATATATCAGATCGCAAGGAACATTAACAAAAAATGTCTTCTAGAGCTTCTTTGCAGCCAGGATGCTGCCCCAAGAACAAGTGCAATTTCGTTACTTACTGAATTATGTTCTCTTAAAAGAAATGATGTTATTTCCTTCTTAAGTGGCTTTGCTGGTTCGGACATATTGAACACAATGGATGTTCTACTTTTGTATCTTAAAACTTCTTCTCTGCATCAAAGACCCCTCGTTGCTGTTCTTCTGTTACACCTTGATTTACTGGACAACTTCTCACTGAAGACTGAGCCTCAAATGCATCGCATATACAGAGACGAGGTTGTGAATGCCATTGCAGTTGCTCTTGATGCCAGCTTACATGATGACAAGGTCCAAGAAAAGTGTTGCAGAGCACTGCTTATTTTGAAAGGACTTTTTGCTTTCAAAGGAAAGAAACAAGCCATGACTGACATTTTAGAGCAAAATGATAGTTCAGAAGTTGATGAAGAGGGTTTAATATCATTGGAAGATGAAGAAAAGAATCAGGAGTGGCTGATGAACTTATTAGAATTGTTGATCGGTGATGGAGAAAGCCCATTTTTGAAGAGCATTTCAAGATGTTTAGCCTCAAGATACCTAGATTTGGTGAAGGTGTGCTTATTAACAGTTACATGGCTTAGCACCAGACTTTTTCTACTAAGTAACTCTGGTTCACCCCTTCCTGCATTCCCAGCCATCATCTATCAGATGAAAGGAATACTGCAGAGTGGGGATCTTGAGCTTAAGACTCTTGCGTCTTTCTCCTTGTTTTATTTCAGTAAGATTCCAGAAAGCAGAGCCCTTTTGATGACTATGGCAGAAGATATTACTCCTCCTCTTCATACACTTATTGATGTGACATGGACTGCAAAGCAGCTACTTATCATGTTAGGGAAGGATTTGTAA 2865 0.3979 MPCYSIRDQERRLSVSDERVRVERTKSYVSQYRLGDEFLNRDTAQSGRPRDNLAEREKLDEGFKNEVVEKSSSNTKLSKKIHSKTPGHIPRNEIIEVGEQEDDRVKHVYSNELFIANRGKEEHLNDFRNRDKWPRMLLKDAKFDRRQSSSSSKQKVGQFNESTKKNVKREERSHSRSTSERFGNSYDKKHGHALQTPADLAIDEVAVQAVIQRKDKVSAKHLLRVFCDSPSQARTTLLPELWEYLFSPQLSHLKAWYNREVHMLVDWPSRRRKVKHLKKVYNEHLDSGTYSFAVYYKDWLTEGAEAPSVPSITVPSISASESYHGSPLGHSSELASSVDSFSPQPMVSKNLYDSVFGSSSKAGTEEEEDNAVEDEVAEEDSKKMTLAIEVHTKGTLMIDGQKWQGKSVRDDIANSSTRVKSNMLYDLSHERTDEVTLSKVTGSVLGMQDAKRHFDPIVSTSSPSSEESVSNSVINPTEMSASPKGLYFPPIPQEFICPLTGTLFEEPTTLETGQTFERAAIKAWFEKGNRTCPVSGNSLDCVAMPLTNLVLKRFIDNWKSEKFSRMLDFASQIADKESHKLKHDESAVSNLESLFTSLNGVNERNYVKQLISIGLLSFLFRRFELGNVEEKTHVLVLLLNCSEADSGCIYQIARNINKKCLLELLCSQDAAPRTSAISLLTELCSLKRNDVISFLSGFAGSDILNTMDVLLLYLKTSSLHQRPLVAVLLLHLDLLDNFSLKTEPQMHRIYRDEVVNAIAVALDASLHDDKVQEKCCRALLILKGLFAFKGKKQAMTDILEQNDSSEVDEEGLISLEDEEKNQEWLMNLLELLIGDGESPFLKSISRCLASRYLDLVKVCLLTVTWLSTRLFLLSNSGSPLPAFPAIIYQMKGILQSGDLELKTLASFSLFYFSKIPESRALLMTMAEDITPPLHTLIDVTWTAKQLLIMLGKDL 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g1284 954 MobiDBLite consensus disorder prediction 142 190 - -
Lele19g1284 954 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 490 565 IPR013083 -
Lele19g1284 954 SUPERFAMILY ARM repeat 614 920 IPR016024 -
Lele19g1284 954 MobiDBLite consensus disorder prediction 162 190 - -
Lele19g1284 954 CDD RING-Ubox_PUB 495 536 IPR045210 -
Lele19g1284 954 PANTHER OS04G0584500 PROTEIN 477 947 - -
Lele19g1284 954 Pfam U-box domain 491 562 IPR003613 GO:0004842|GO:0016567
Lele19g1284 954 ProSiteProfiles U-box domain profile. 490 565 IPR003613 GO:0004842|GO:0016567
Lele19g1284 954 SUPERFAMILY RING/U-box 483 561 - -
Lele19g1284 954 SMART Ubox_2 494 558 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g1284 Lele-ChrLele19 9186814 9193126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g1284 487 683 U-box Gene Family AT1G68940 32.843 4.39e-13 71.6