Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g1272 ATGATGGAGGCAGATTCTTTGTCCGAGTCGATCAACAAGGTTCAGTCACGATTCGATTTCGAGGTTCCTGAACCGGCTGTTCGTCTAGCTCTGACGGAATCTCTGTTCGACGTGGATGCTGCTGTGGAGTTTCTCAACAACAATCCAGGGTTTCTGGCCCGACCCGTCACTGTTGTTCGGGCCATTACTAGCGCTGGTTCTCGGGTTCTGGCACCGACGCCGGTAAAGCAAGAGGGGTACGATGACTCGCAAATGTTTGATGAAATGAGTCTGAAGAGCAAGGTGAAAGAGGAACCCGTTGATTTGGCGCTTGAGAATCAAGCCCAAAATCCAGCGGAAGTAGAAAATGGTTCCGATGATTCTCATGAAGGTGCAAAACCGCTCGAGGAGTTCAATGTGAAGAAAGAAGCGAGTGAAGAAATCAACGTCGATCCCGAGAAGCTGCTTTCTGTGAATGAAGAAATGAATGTCGATGTTTCTAGTTCATCGCCATCCCAAACCCAGATTCAAGAGTATACTGCTATTCGGAAATCTTCATGGGAAGCTGGATATGAAGAGTTCCTTAAGGCTTCTGATGCAAAAGTTATTTCAAGGGAAGAATATCTAAAGTCTATTGGGGAACAACAACAACAACCATCACTATCAGTTCAGGCTGAAGCTTGTAAAGCAAAGCAGGATACGAAGAAGGTCTTTGACAAGAAAGAAGTCTCTACCTGTGATAGAGGTGAAGTAAAAATCATCAAAGAAGTTGGTTTCTTTCCATGTTTTCAGAAATCATCTTCGCAGGTAAAAAAGAAGGTTGTAGAGAAGGTTCAACCTAGACCTCCAAACGTGGAGGATGGGGACTTTCCAGTAGAACCAGACTGGTTTTTAGTGGGACGGACAATAGTCACTGCAATTTCAACTACCAAAGGGAAGAAACTGGTGGACAATGAGATTGTAAACTTTGATTTCCAATCTGTATTTGCGAAACACAAATCAAGATGGATTCTTCGCATTTCAACCAAACGCTCTGGGGAGGTTGGATGGGTTAATAGGGAATGGGCTGAAGGGGTTGTTCCACTTATTCGTTCTGCAAAGGTCAAGGTTAGAGGCCGATGCATAGCTGCACCACCTGTCTTACAAATGATGCAAGAAGTCATGTTGTGTGTAAGCTTTTACATTCACCACACTGCAATCACTTCGGAAGTCAATAATTCATGGAGGCTTGATGGATCTTCTTACATTGACCCTTCTGTTTATCCTCTTCCCAAAGTGTTCAAATTGATAGACATGAAGCCATATCAGAATGCTGCTTTTACCCCAGGGGAACTTGATTCTAGGAAACGTTTGTTCAGTATCACGGGTAATACGGATGAAGCTGCTTCAGATTTACCTGGCTTGAAAAGGAGAAAGGGCTGTCCTCCAGATCAAGATGATGAACAAGCGGTGTCACAGTCATCATTGAATAAGCTTGTTGGAGCAGCTGAAGTCTACGACTTGGAGGAGATGGAAGGGCCAAGCACACTGATGTGTGATCTAAAGCCTTACCAGAAACAAGCACTGCATTGGATGTCAGAATTAGAGAAAGGAACTAATGCTAAGAATGCTGAAAGTACTCTTCATCCTTGCTGGGCAGCCTATTGTATTGATGATGAGAGGGTTCCCACTGTTTACGTAAACAACTTCACAGGGGAAGCAACAACTAAGCTCCCACCTGCATTTCGATTGCCAAGAGGAGGAATTCTCGCAGATGCTATGGGACTTGGGAAGACTGTCATGACTATTGCTCTAATTCTTGCAATACAAGGGAGAGGAGATGATTGTGGTCATTCAAGAAAGCGGAACCAAGTTTCTCGTACTGACCCCACATTCAAAGTTGATGGCGGCACCCTTGTTGTTTGTCCCATGGCATTGCTAGGTCAATGGAAGGACGAGCTTGAAACCCACTCCAAGCCAAGAAGTTTATCTATTTTTGTTCACTACGGCGGGGATAGAACTAATGATCCTCGGGTGATCTCAGGGCATGATGTTGTTTTAACAACATATCGTGTCCTAGGAGATGCATATAAAACTTATCGAGAAAACAGCATTTACCATAAGGTCAACTGGCATAGGGTGGTCCTAGACGAAGCTCATTCCATTAAAGCCTATAAATCACACGCTGCACAAGCTGCTTTTACGCTGACCTCGCACTGCCGTTGGTGTCTTACCGGAACCCCTCTACAGAATAGCTTGGAAGACCTATTCAGCCTCTTGTGCTTCTTGCATGTTGAACCATGGGGCAATTTTGCATGGTTTAATAAATTGGTTCAACGGCCTTATGAGAATGGTGATCCTCGAGGCTTGAAATTAATCAAGGCCATTTTGAAGCCATTGATGTTAAGAAGAACAAAGGAAACAAAGGATAAGTGTGGAAGGCCCATACTTGTTCTTCCACCAACTGACATCCAATTAGTTGAGTGTGAACAGTCAGCAGCTGAAGCTGAATTGTATAATGCCCTCTTCAGGAAATCTAAACATCAATTCGATGAGTATGTCGGGCAAGGAAAAGTTCTCAGCAACTATGCCAATATTCTCGAGTTATTATTGCGGTTGAGACAATGTTGTAACCATCCGTTTCTGGTCACAAGCCGAAGTAACTCAAAGAAACCTGTGGACTTTGACATACTCGCAAAAAGACTACTCGAGTTCAACTGTAATTCTACAAGTCAGAGTACATATGTTACGGAGGCCATAGAGGCTCTTCGCAGGGGTGAAAAGCTAGAATGTCCAATATGCTTAGAATCTGCAGATGATCCTGTCTTCACTCCATGTGCACACAGAATGTGTAGGGAATGCTTACTTTCTAGCTGGAGTGACCAAATCAGTGGTCCTTGTCCTCTCTGTCGTCTCAAGCTGAACAAAACTGATCTAATCAATTGTCCTTTTGAGAACCAGTTCGTGGTCACTGATGTTGAGAAGGAATGGAAGGAATCTACCAAGGTTTCAAAGCTTTTGGAACACTTGGAACGAATTCAGCGATATCGCCCTGCTGAAAAAAGCATTGTGTTCAGCCAGTGGACTTCCTTTTTGGACCTCCTGGAGGTTGCTTTGAAGAAGAAAGGAATGGGCTATTTTAGATTTGATGGGAAACTGCAACAAAAGAACAGGGAAAGAGTTTTGAAGGAGTTTAACGAGTCAAGAGAGGAAAGGGTTTTGTTGATGTCACTTAAAGCTGGTGGTGTAGGCTTGAATTTGACTGCAGCCTCAAATGTTTTCATGATGGATCCATGGTGGAATCCTGCCGTTGAAGAGCAAGCAATTATGAGAATCCATCGCATAGGACAAAAGCGAACAGTTATGGTCAGAAGATTCATTGTCAAGGATACGGTGGAAGAGAGGCTGCAACAAGTGCAAGCGAAGAAGCAGAAGATGATATCTGGAGCCCTCACAGAAGATGAGGTTAGGTCAGGTAGGATTGAAGACCTCATGATGCTGTTCAGTTGA 3468 0.4394 MMEADSLSESINKVQSRFDFEVPEPAVRLALTESLFDVDAAVEFLNNNPGFLARPVTVVRAITSAGSRVLAPTPVKQEGYDDSQMFDEMSLKSKVKEEPVDLALENQAQNPAEVENGSDDSHEGAKPLEEFNVKKEASEEINVDPEKLLSVNEEMNVDVSSSSPSQTQIQEYTAIRKSSWEAGYEEFLKASDAKVISREEYLKSIGEQQQQPSLSVQAEACKAKQDTKKVFDKKEVSTCDRGEVKIIKEVGFFPCFQKSSSQVKKKVVEKVQPRPPNVEDGDFPVEPDWFLVGRTIVTAISTTKGKKLVDNEIVNFDFQSVFAKHKSRWILRISTKRSGEVGWVNREWAEGVVPLIRSAKVKVRGRCIAAPPVLQMMQEVMLCVSFYIHHTAITSEVNNSWRLDGSSYIDPSVYPLPKVFKLIDMKPYQNAAFTPGELDSRKRLFSITGNTDEAASDLPGLKRRKGCPPDQDDEQAVSQSSLNKLVGAAEVYDLEEMEGPSTLMCDLKPYQKQALHWMSELEKGTNAKNAESTLHPCWAAYCIDDERVPTVYVNNFTGEATTKLPPAFRLPRGGILADAMGLGKTVMTIALILAIQGRGDDCGHSRKRNQVSRTDPTFKVDGGTLVVCPMALLGQWKDELETHSKPRSLSIFVHYGGDRTNDPRVISGHDVVLTTYRVLGDAYKTYRENSIYHKVNWHRVVLDEAHSIKAYKSHAAQAAFTLTSHCRWCLTGTPLQNSLEDLFSLLCFLHVEPWGNFAWFNKLVQRPYENGDPRGLKLIKAILKPLMLRRTKETKDKCGRPILVLPPTDIQLVECEQSAAEAELYNALFRKSKHQFDEYVGQGKVLSNYANILELLLRLRQCCNHPFLVTSRSNSKKPVDFDILAKRLLEFNCNSTSQSTYVTEAIEALRRGEKLECPICLESADDPVFTPCAHRMCRECLLSSWSDQISGPCPLCRLKLNKTDLINCPFENQFVVTDVEKEWKESTKVSKLLEHLERIQRYRPAEKSIVFSQWTSFLDLLEVALKKKGMGYFRFDGKLQQKNRERVLKEFNESREERVLLMSLKAGGVGLNLTAASNVFMMDPWWNPAVEEQAIMRIHRIGQKRTVMVRRFIVKDTVEERLQQVQAKKQKMISGALTEDEVRSGRIEDLMMLFS 1155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g1272 1155 CDD SF2_C_SNF 982 1113 - -
Lele19g1272 1155 SMART helicmild6 1019 1102 IPR001650 -
Lele19g1272 1155 SMART ring_2 917 956 IPR001841 -
Lele19g1272 1155 ProSitePatterns Zinc finger RING-type signature. 932 941 IPR017907 -
Lele19g1272 1155 Gene3D - 562 791 IPR038718 -
Lele19g1272 1155 Pfam Helicase conserved C-terminal domain 990 1102 IPR001650 -
Lele19g1272 1155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 910 966 IPR013083 -
Lele19g1272 1155 SUPERFAMILY RING/U-box 912 966 - -
Lele19g1272 1155 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 565 752 IPR014001 -
Lele19g1272 1155 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 281 1154 - -
Lele19g1272 1155 Pfam Zinc finger, C3HC4 type (RING finger) 917 956 IPR018957 GO:0046872
Lele19g1272 1155 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 803 1147 IPR027417 -
Lele19g1272 1155 SMART ultradead3 503 765 IPR014001 -
Lele19g1272 1155 Pfam HIRAN domain 293 382 IPR014905 GO:0003676|GO:0008270|GO:0016818
Lele19g1272 1155 MobiDBLite consensus disorder prediction 455 479 - -
Lele19g1272 1155 CDD DEXDc_SHPRH-like 507 790 - -
Lele19g1272 1155 CDD RING-HC 917 956 - -
Lele19g1272 1155 ProSiteProfiles Zinc finger RING-type profile. 917 957 IPR001841 -
Lele19g1272 1155 MobiDBLite consensus disorder prediction 457 471 - -
Lele19g1272 1155 Pfam SNF2-related domain 510 868 IPR000330 GO:0005524|GO:0140658
Lele19g1272 1155 FunFam DNA repair protein RAD5B 562 791 - -
Lele19g1272 1155 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 493 790 IPR027417 -
Lele19g1272 1155 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 991 1151 IPR001650 -
Lele19g1272 1155 Gene3D - 806 1154 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g1272 Lele-ChrLele19 9102414 9108636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g1272 257 1154 RAD5 or RAD16-like Gene Family AT5G43530 63.060 0.0 1202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele19g1272 SNF2_N 7e-81 CL0023