Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g1241 ATGGCAACTCTGAATCTGAAGGAGACCGAGCTGTGTCTGGGATTACCTGGCGGTGGTGGCGGTGGCAGCGGTGAGGTGGTGGAAACCACAGCAACTGCCACTCCCAAGGCCTCAGGGAACAAGAGATCCTTCTCTGCAACTGTTGATCTCAAGCTCAACCTCGCCCACGATTCCAAGGACGCCGCCGGCGAAGAAGAAGAAGATCTCACCAATCAGGACCACCACAAGAATATCGCCTCCTCCAAGAAGGACACAACTAAGCCACCTGCTAAGGCACAAGTGGTAGGTTGGCCACCAGTGAGGTCATACAGGAAGAACGTGATGTCACATACTAATAAGGTGTGTAGTGAAGATGGGAATACTGAGAAGAAGACTGCGCCGGCTCCGGTGACCGGATCAGGATCATTTGTTAAGGTGTGTATGGATGGCGCACCCTACCTTAGGAAGGTGGACCTGAAGACGTACAAAAGCTATCAACAACTTTCTGATGCCTTGGCCAAAATGTTCAGCTCCTTCACCATGGGGAAATATGAGGGGCCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTGCCGAACAGCTCTGAGTACGTCCCAACCTATGAAGATAAGGATGGAGATTGGATGCTTGTTGGCGATGTCCCATGGGAGATGTTCGTTGATTCATGCAAGCGTCTCCGAATAATGAAAGGATCAGAAGCCATTGGATTGGTTTCAGCCCCAAGAGCCATGGAAAAATGCAAAAGCATCAGAAGCTGA 771 0.5032 MATLNLKETELCLGLPGGGGGGSGEVVETTATATPKASGNKRSFSATVDLKLNLAHDSKDAAGEEEEDLTNQDHHKNIASSKKDTTKPPAKAQVVGWPPVRSYRKNVMSHTNKVCSEDGNTEKKTAPAPVTGSGSFVKVCMDGAPYLRKVDLKTYKSYQQLSDALAKMFSSFTMGKYEGPQGMIDFMNESKLMDLPNSSEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLVSAPRAMEKCKSIRS 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g1241 256 MobiDBLite consensus disorder prediction 13 41 - -
Lele19g1241 256 MobiDBLite consensus disorder prediction 56 82 - -
Lele19g1241 256 Coils Coil 254 256 - -
Lele19g1241 256 FunFam Auxin-responsive protein 130 246 - -
Lele19g1241 256 ProSiteProfiles PB1 domain profile. 134 235 IPR000270 GO:0005515
Lele19g1241 256 SUPERFAMILY CAD & PB1 domains 129 234 - -
Lele19g1241 256 Gene3D - 130 246 - -
Lele19g1241 256 MobiDBLite consensus disorder prediction 56 94 - -
Lele19g1241 256 Pfam AUX/IAA family 8 242 IPR033389 -
Lele19g1241 256 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 240 IPR003311 GO:0005634|GO:0006355
Lele19g1241 256 MobiDBLite consensus disorder prediction 27 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g1241 Lele-ChrLele19 8569154 8571498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g1241 84 238 B3 DNA Binding Superfamily AT2G46530 29.032 2.62e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele19g1241 AUX_IAA 1.8e-82 CL0072