Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g1240 ATGGAAAACAAAGTCGCTTATGAGAATGATCTCAATCTCAAGGATACAGAGCTCAGACTGGGGTTACCAGGAAGAAGAGAAGAAGAAGAACGACAACAATCACTGGTTAGCTCTAAGAACAACAAGAGGCCTTTATCTGAAGCTTCTGAGGATTGTGGGAAAAATGATTCTAATGAATCAGCTCCTCCGGCCAAGGCAAAGATTGTGGGGTGGCCACCAATCAGATCTTACAGGAAGAACAGCTTGCAGGAGGCTGAGGCTTCTGGGATTTATGTGAAAGTGAGCATGGATGGAGCTCCTTACCTCAGAAAGATTGATTTGAAGGTTTACAATGGCTATCCAGAACTCCTCAAGGCTTTAGAAAACATGTTCAAGTTAACCATAGGTCACTACAATGAAAGAGAGGGTTATAAAGGTTCAGAATTTGCACCTACATATGAGGACAAGGATGGTGACTTGATGCTTGTTGGAGATGTTCCATGGGACATGTTTATGACTACCTGCAAAAGACTAAGGATCATGAAAGGTTCAGAAGCTAGAGGATTGGGTTGTGGAGTATGA 561 0.4278 MENKVAYENDLNLKDTELRLGLPGRREEEERQQSLVSSKNNKRPLSEASEDCGKNDSNESAPPAKAKIVGWPPIRSYRKNSLQEAEASGIYVKVSMDGAPYLRKIDLKVYNGYPELLKALENMFKLTIGHYNEREGYKGSEFAPTYEDKDGDLMLVGDVPWDMFMTTCKRLRIMKGSEARGLGCGV 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g1240 186 MobiDBLite consensus disorder prediction 16 36 - -
Lele19g1240 186 Pfam AUX/IAA family 50 183 IPR033389 -
Lele19g1240 186 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 180 IPR003311 GO:0005634|GO:0006355
Lele19g1240 186 ProSiteProfiles PB1 domain profile. 89 176 IPR000270 GO:0005515
Lele19g1240 186 SUPERFAMILY CAD & PB1 domains 80 175 - -
Lele19g1240 186 MobiDBLite consensus disorder prediction 16 66 - -
Lele19g1240 186 Gene3D - 83 186 - -
Lele19g1240 186 FunFam Auxin-responsive protein 84 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g1240 Lele-ChrLele19 8534270 8535132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g1240 92 185 B3 DNA Binding Superfamily AT4G23980 34.043 3.90e-11 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele19g1240 AUX_IAA 1.7e-52 CL0072