Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g1227 ATGGTAGGATTGGAACTCATACCAGTGGGTACGATTCTGGCTGTGCTGACGAATCAGATTTTAAAAACAGCCAATGCAGCTGCTGAAGTTCTTGTTGAAAAAGAATCTTTTAAGGTTCTTTCACGACACTTGTACGATATTGAACCAGTGCTAAAGGAATTACAGCTTCAGGAATTGAATGAGTCTCAAGCTGCAAGAATTGCTCTGGAGTCTCTTGAAGAAGACGTGAAGAGGGCAAATAAAGTGGTTGAGAAGTACAGGAACCGTGGTCGTTTTTACTTGCTGCTTAATTGCAGGCACATAGTTCATGAAGTTGGAGAAGTCACAAGAAGCATTGGAAAGTCCCTGGCTGTCCTATCACTTGCAAATACTGAAGTCTTATCACGAATTTCAGATCAGGTAGATAGATTACAAAATGAGATGCAAAGGGTGGAGTTCGAGGCATCACATTCTCAACTTCAAATAGTGGAGAGGTTGGACCAGGGCCTTAGGGAGCAGAAACTAGATCAGGCTTTCGCGAATGACATGCTCGAAGAAATCGCAAGGGCGGTTGGCGTGCCAGTAGAGCCCTCGGAGATAAGCAAAGAGCTGGCCAGCATTAGGAAAGAAAAAGAAGAAGCCGCTGACAGGAAAGAAAGAGCCGAGGTCTTCTTCTTGGAGCAGGTCATCGAGTTACTATCCCGAGCTGATGCTGCAAGAGATTATGAAGAAGTTAAGAAACAATACTATGAAAGACTTCAGGTGATAGAAAGATACAATTCAAGGGAAAAATATATAGAGCCACTTAATTCTTTCCTTTGCTGTATAAACAGAACCGTTATGGTAGATCCAGTAAGCCTTGGCACCGGTACTACTTGTGAGAGATACGCCATTGAGGCTTGGTTTGACAGTGGCATGAGGACTGATCCGGAAACTAAAGAAGTACTCGAAGATACTAAGTTGAGATCCAATGTTCCACTTAGACAATCCATAGAGGAGTGGAGAGAACTTAATTACTGCCTTACAATCAGGTCTATCAGGGACAACCTTTTATCGAATTCTAACTTATCCATGCTAGAATCGTTGGGACAAGTTCAGGATCTCATAAGAGACAATTCTATAAACAAGGATTGGGTTTCTATAGGAGGGCTTACCGACATTATTATCTCTATCCTTGGGAACACTGATAATGGAGAGGTGAAGATCAACATTTTGAGTACTTTGAATGATGCAGTAGAAGGTCACGAAAAAGTATCAGAATCTCAAGGATGGGATCACATTATTAGCTGCTTGGGCAGCTACTCTAGAATTTCAAAAGCTGCAATTAACTTGCTGTATGAGTTACTGCAAGATCGAACCGGTTGGAATGTGTCTCTCTGTAGAAAACTGTCCCAGCATCACGGTGCAATTTCTTCCCTTGTTACCCTTCGAAAGGGTCCAGAAGAGGAGTCAGCTGAGATTGCAGAAAAGATTCTGATGGAGCTTTTCGACATAGATGAAGTCAACATTTCTAGTGCTGCCAAGTTTGGCTGGTATAAACCGCTTGTCGATCATATGGTTCAAGGAGTAGAATCTTCAAGAATATCAATGGCGAAAACCATTGTGAATATGGAGCTGAGTGATTCAAATTTGTACCTCCTTGGGGAAGAAGGAGTTATACCTCCTTTGCTTGAAATGCTGACTGGCAATGTTGAAGTAAAAGAAATCTCGTTATCTGCACTGGTTAAACTATCGGGTTCTCGTGCCAACAAAAGGATTATAGCTGCATTGGGGGGAGTTCCTATTATTCTAGAACAAATGTTCTCTCCTTCTATGAAAACTCTAATTACCATCAAATGTTCTGAGATCCTGGAGAAGCTTTCTGCTGCTGATGATGGAATTGATTTCTTTGTTGACAGAGAAGGGAAACAACTTGAGTTAGATTCTATTATTGCCAAATTACTTGCTCTTCAGCAGAGTCCCAACTTAGCTCACAATATCCGCAAGCCTTCTTTGCGTGCACTTCTCGGAATTTGCAAGTTTGAAACCGGTTTAGTCAAGAAGGCTGTCCTGGCTGCCAGTGGTGTATCTCTAATCCTTCCCCTTCTTGATGACTCTGATTCGGAAATCAGAAAGACTGCCATAAACCTTCTCTTCCTTTTCTCCCAGCATGAACCAGAGGGAGTGGTTGAATACCTCTTCAGGCCAAGGAGGCTGGAGGCTTTAGTGGGATTTCTAGAGATTGATGACAATGACGTGCAGATGGCGGCTGCTGGTTTGCTAGCGAACTTACCGAAATCCGAGAAAGAGCTCACTATGAAGCTGATTGAATTGGGTGGACTTGATGCAATCATATGCATTCTGAAAACTGGAACAATGGAAGCAAAAGAAAATGCTCTCAGTGCACTCTTCAGGTTCACAGATCCGACAAACATCGAGTCACAGCGTGATTTGGTTAAGCGTGGAATATATCCTTTGCTCGTGAATTTTCTCAACACTGGTTCGATAACAGCAAAGGCTAGAGCAGCAGCATTCATTGGAGATCTTTCTACGAGCACACCAACGCTCACACTCGCAGCCAAATCAACTGGCTGCTGCTGGTGTTTTAGATCATCAAGAGTTCCTTTATGCCCAGCACATGGTACTGTATGCAGTGTGAGCAACACATTTTGTCTCTTGGAAGCACAAGCATTGCCTGGTTTAGTAAATCTCTTACGCGGGGAGGTTGATGTAACTGCTTATGAAGCAATACAGACACTTTCAACATTGGTTTTGGAAGACTATCCTCAAAGGGGAGCTCGAGTTTTGCACGAATTGAATGCTATAAAACCGCTTCTGGATATTCTGACATGGGGGTCTGATTCTCTCAAGGCTGAGGCTCTAGGACTCTTGGAGAAGGTCTTTGTATCAAAGGAAATGGTGGAATTCCATGGCGCAATAGCTCGATCGCGTCTGGTTGGTTTAACCAGGATGAATATATATGGAGATGGCCATCTCAGAAGAAAAGCTGCTAAGGTATTATCATTGATCGAACGGTATTCGAGGTCATCATCTGCTGCTGTTTCAGGAGTTCTTGAGTGA 3039 0.4301 MVGLELIPVGTILAVLTNQILKTANAAAEVLVEKESFKVLSRHLYDIEPVLKELQLQELNESQAARIALESLEEDVKRANKVVEKYRNRGRFYLLLNCRHIVHEVGEVTRSIGKSLAVLSLANTEVLSRISDQVDRLQNEMQRVEFEASHSQLQIVERLDQGLREQKLDQAFANDMLEEIARAVGVPVEPSEISKELASIRKEKEEAADRKERAEVFFLEQVIELLSRADAARDYEEVKKQYYERLQVIERYNSREKYIEPLNSFLCCINRTVMVDPVSLGTGTTCERYAIEAWFDSGMRTDPETKEVLEDTKLRSNVPLRQSIEEWRELNYCLTIRSIRDNLLSNSNLSMLESLGQVQDLIRDNSINKDWVSIGGLTDIIISILGNTDNGEVKINILSTLNDAVEGHEKVSESQGWDHIISCLGSYSRISKAAINLLYELLQDRTGWNVSLCRKLSQHHGAISSLVTLRKGPEEESAEIAEKILMELFDIDEVNISSAAKFGWYKPLVDHMVQGVESSRISMAKTIVNMELSDSNLYLLGEEGVIPPLLEMLTGNVEVKEISLSALVKLSGSRANKRIIAALGGVPIILEQMFSPSMKTLITIKCSEILEKLSAADDGIDFFVDREGKQLELDSIIAKLLALQQSPNLAHNIRKPSLRALLGICKFETGLVKKAVLAASGVSLILPLLDDSDSEIRKTAINLLFLFSQHEPEGVVEYLFRPRRLEALVGFLEIDDNDVQMAAAGLLANLPKSEKELTMKLIELGGLDAIICILKTGTMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVNFLNTGSITAKARAAAFIGDLSTSTPTLTLAAKSTGCCWCFRSSRVPLCPAHGTVCSVSNTFCLLEAQALPGLVNLLRGEVDVTAYEAIQTLSTLVLEDYPQRGARVLHELNAIKPLLDILTWGSDSLKAEALGLLEKVFVSKEMVEFHGAIARSRLVGLTRMNIYGDGHLRRKAAKVLSLIERYSRSSSAAVSGVLE 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g1227 1012 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Lele19g1227 1012 Gene3D - 337 666 IPR011989 -
Lele19g1227 1012 SUPERFAMILY ARM repeat 555 955 IPR016024 -
Lele19g1227 1012 Gene3D - 866 999 IPR011989 -
Lele19g1227 1012 SUPERFAMILY ARM repeat 336 647 IPR016024 -
Lele19g1227 1012 SMART arm_5 797 837 IPR000225 GO:0005515
Lele19g1227 1012 SMART arm_5 915 955 IPR000225 GO:0005515
Lele19g1227 1012 SMART arm_5 711 752 IPR000225 GO:0005515
Lele19g1227 1012 SMART arm_5 573 615 IPR000225 GO:0005515
Lele19g1227 1012 SMART arm_5 871 911 IPR000225 GO:0005515
Lele19g1227 1012 SMART arm_5 404 443 IPR000225 GO:0005515
Lele19g1227 1012 SMART arm_5 533 572 IPR000225 GO:0005515
Lele19g1227 1012 SMART arm_5 754 794 IPR000225 GO:0005515
Lele19g1227 1012 SMART arm_5 669 709 IPR000225 GO:0005515
Lele19g1227 1012 Gene3D - 671 858 IPR011989 -
Lele19g1227 1012 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 335 IPR013083 -
Lele19g1227 1012 Coils Coil 62 89 - -
Lele19g1227 1012 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Lele19g1227 1012 Gene3D - 8 123 IPR036537 GO:0007166
Lele19g1227 1012 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1004 - -
Lele19g1227 1012 SUPERFAMILY RING/U-box 248 330 - -
Lele19g1227 1012 Coils Coil 127 154 - -
Lele19g1227 1012 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 544 585 IPR000225 GO:0005515
Lele19g1227 1012 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g1227 Lele-ChrLele19 8333846 8337678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g1227 69 973 U-box Gene Family AT1G68940 23.710 3.33e-40 159