Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g1197 ATGAATCCAGTAGTGAAGGAGGAGATTATTATGGAGGCAAGCACCACCGTGACTGGTGCTCCACTACCACAGCCAATGGAGGGGCTTCACGAAGCCGGTCCTCCGCCGTTTCTGACAAAAACATATGACATCGTCGACGATGTTTCCACCAACCACATCGTTTCGTGGAGCCGAGGTAACAATAGCTTCGTTGTGTGGGATCCACAGTCATTCTCCATGAGTCTCCTTCCCAGATTCTTCAAACACAGCAATTTCTCCAGCTTCGTCAGACAGCTTAACACCTATGGATTCAGGAAGGTTGATCCAGATAGGTGGGAATTTGCCAATGAAGGGTTTCTGAGAGGACAAAAGCATCTTCTGAAGAACATAAGGAGAAAGAAAACACCTCATCAACAACAACATCATCACCAAGCTCTAGATCCATGCGTGGAAGTAGGCCGGTTCGGGCTCGACGGAGAGATCAACCGGCTCCGGCGAGACAAGCAGGTGCTCATGCTGGAACTGGTGAAACTCAGACAACAACAACAGAATACAAAAACATACCTTCAACATATGGAAGGTAGGCTCAAAAGAACCGAACAGAAACAGCAACAAATGATGAACTTCTTAGCAAGAGCTATGCAGAACCCTAACTTCGTTCACCAGTTAGTTCAGCAGAAAGAATGGAAGAAAGAGCTTGAAGAAGCAATTTCAAACAAGAGAAGAAGAACCATCGATCAAGGACCTAGTACTAGTAATGTTGAATTAGAATGCCCAGATTTCGTGGAACTTGATGAACCTGATAATATTATTGCTGCTGATCCGGATTTTGATTTGATTGGAAAGTTAGAGGAGCATGAAAGCATTAATAATACAGAGAAAGAGATTGATGATCAAATGTTTTGGCAAGACTTGTTGAACGAGAATGTTGAAGATGTTTTGCGAAGTTTCGAGGAAGATGAGGAAGATGTTGATGTGTTGGCTGAACAACTTGGTTATTTAGCCTCTAATAATAGTCCTCATCAGTAA 1008 0.4345 MNPVVKEEIIMEASTTVTGAPLPQPMEGLHEAGPPPFLTKTYDIVDDVSTNHIVSWSRGNNSFVVWDPQSFSMSLLPRFFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKNIRRKKTPHQQQHHHQALDPCVEVGRFGLDGEINRLRRDKQVLMLELVKLRQQQQNTKTYLQHMEGRLKRTEQKQQQMMNFLARAMQNPNFVHQLVQQKEWKKELEEAISNKRRRTIDQGPSTSNVELECPDFVELDEPDNIIAADPDFDLIGKLEEHESINNTEKEIDDQMFWQDLLNENVEDVLRSFEEDEEDVDVLAEQLGYLASNNSPHQ 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g1197 335 PRINTS Heat shock factor (HSF) domain signature 88 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele19g1197 335 PRINTS Heat shock factor (HSF) domain signature 37 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele19g1197 335 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele19g1197 335 SMART hsfneu3 33 126 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele19g1197 335 Pfam HSF-type DNA-binding 37 126 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele19g1197 335 Gene3D - 29 128 IPR036388 -
Lele19g1197 335 Coils Coil 154 174 - -
Lele19g1197 335 FunFam Heat shock transcription factor 1 30 127 - -
Lele19g1197 335 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 23 246 IPR027725 -
Lele19g1197 335 SUPERFAMILY "Winged helix" DNA-binding domain 33 126 IPR036390 -
Lele19g1197 335 ProSitePatterns HSF-type DNA-binding domain signature. 76 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g1197 Lele-ChrLele19 7957108 7959365 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g1197 18 331 HSF AT3G22830 54.987 8.26e-129 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele19g1197 HSF_DNA-bind 8.4e-32 CL0123